Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00881 ATGTCAGAGACTAACGACTGTGCCGCCACCGTCACCGCCGGTGGTGGTTACCGGAGTACATTTTCAAGGTCAGTTTCATGGACTGACCGTTCACCTTCAAACAGAAAACCACCTCATGCGGCGGCGAAAAATAGACAGCTTCGTCCTCTTTCTATCAACAAACGTAGCATTGAAGAATGGCCAAGTGCTGGATCTGACGATCTTGGAGTTTGGCCACAAGCAGATACACCAAGAGGAAGAGGTTCAATCACTGGTTCAGAGTTTCAGTTCAAAAGAGACAAGTTAGCTTTTTATGATAAAGAATGTTCTAGAATTGCTGAACATGTGTACTTAGGAAGTGACACTGTTGCTAAGAATCACGAGCTTCTAAGACAGAATGGGATTACTCATGTGCTTAATTGTGTTGGGTTTGTTTGTCCTGAATATTTCAAAAGTGAGTTTGTTTATAAAACTCTTTGGTTGCAGGATAGTCCAACAGAAGATATAACAAGTattttatatgatgtttttgattattttgaggATGTTAGATTACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGTGTTTCTAGATCAACTTCTTTGGTTATTGCTTATCTTATGTGGAGAGAAGGGCAAAGCTTTGAAGATGCTTTTCATTATGTCAAGAATGCTCGTGGTGTTACAAATCCTAACATGGGTTTTGCTTGTCAACTTTTGATGTGTCAGAAAAGAGTGGTAAATGTACATTCAAATGCAAATGGTAATGTTAATGTTATGCCTTCAAGTCCTAATTCTGTTCTTAGGATGTATAGAATGGCGCCTCATTCACCGTATGATCCTCTTCATGTGGTACCTAAAATGGTTGACAGGCCTTGTGCTAAGGCGCTCGATTCTCGTGGTGCTTTTATTGTTCATGTTCCTTCTGCTatatatgtttggattggtAAAAATTGTAGTCCTGTTATATCTTGTAATGCACAATCTGCAGCTACGCAGGTTGTTCGTTATGAGAAAGCAAATGTTCCAATTCTTAGCATTTGTGAAGGTGAAGAGCCAATGGAGTTTTGGGTTGCTCTTTCTAACCAGGAACTGGTGGAGAAGGAAAGAATGGGGATTGATGGTGATATGGGGATTCATCCTAGGAAAGTCGATGAATACGATTTGGATTTTGGGATTTTTCACAAAGCACTTGCCGGTGGTGTTGTTCCACCTTTTTCTGTGTCTAATACAGGATCAGAAACTTTGCTTCCTGCTAGAGAGAATAGCTGGGGAAGACTAAGGAGGAAGCTTGCTAATAGTATCATGAAAGGTTTGTTTACATCCTCCAAATGTTGTGATACAACCTCACCAAAAGATGAACTATTAAGAGAGAatgtggaagaagatgaaaaacagCATTCAGTTGTTGATCATTCCTCAAAGCATCTTTCTGGTTCATCTAGTTACATTGAATATATTGTTGATCACAGCTCTGACAAGCCAAAAGATAGTCTTGTATTCATGGATCGCTTTGTTCCTAATGTTGGTTCATCATTGCCACCAACTCATCGAAAATCAGATTCTTTTCCTTGTTCTTTAAGTAACAGCCCAAAATTCAGTTCAAAGTCGCCAACCCTTTCTCCTTCCAATTCTGATTGTGCTAGCTCATTCACATTTTCGCCTGCGTCTACACATTGGTCTGATTTGTCATTCATATCATCTCGGCAGCCATCGCCTTCTGGACTCGAATCATCTGAACAACCcttttatcttaataaagatgCATCTTTGTTAGAAAGATCCTCTTCACTTCGCAACACTGCTGtctcttcatcttcagagaCACTTTTGGTTAATCACAACACGGTAGGGACAAACTCCTACAAAGGGCGTAACTCTAACATCTCCATTGCGGAGCGCAGAGGGAGTAAACCGCCACCTCAAATGTTCGTAACTTCTGTTAGTGAATCATTGCGTGCTCACAAAGTTCTGaaaaggaaaaggatTCTCTCAGAGTGA 1986 0.3857 MSETNDCAATVTAGGGYRSTFSRSVSWTDRSPSNRKPPHAAAKNRQLRPLSINKRSIEEWPSAGSDDLGVWPQADTPRGRGSITGSEFQFKRDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKSEFVYKTLWLQDSPTEDITSILYDVFDYFEDVRLQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLMCQKRVVNVHSNANGNVNVMPSSPNSVLRMYRMAPHSPYDPLHVVPKMVDRPCAKALDSRGAFIVHVPSAIYVWIGKNCSPVISCNAQSAATQVVRYEKANVPILSICEGEEPMEFWVALSNQELVEKERMGIDGDMGIHPRKVDEYDLDFGIFHKALAGGVVPPFSVSNTGSETLLPARENSWGRLRRKLANSIMKGLFTSSKCCDTTSPKDELLRENVEEDEKQHSVVDHSSKHLSGSSSYIEYIVDHSSDKPKDSLVFMDRFVPNVGSSLPPTHRKSDSFPCSLSNSPKFSSKSPTLSPSNSDCASSFTFSPASTHWSDLSFISSRQPSPSGLESSEQPFYLNKDASLLERSSSLRNTAVSSSSETLLVNHNTVGTNSYKGRNSNISIAERRGSKPPPQMFVTSVSESLRAHKVLKRKRILSE 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00881 661 SUPERFAMILY Actin depolymerizing proteins 258 358 - -
Tsu02g00881 661 ProSiteProfiles Dual specificity protein phosphatase domain profile. 101 243 IPR020422 GO:0006470|GO:0008138
Tsu02g00881 661 SMART VILL_6 267 358 IPR007122 GO:0051015
Tsu02g00881 661 SMART dsp_5 101 240 IPR020422 GO:0006470|GO:0008138
Tsu02g00881 661 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 160 221 IPR000387 GO:0016311|GO:0016791
Tsu02g00881 661 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 242 IPR029021 -
Tsu02g00881 661 Gene3D Severin 264 362 IPR029006 -
Tsu02g00881 661 PANTHER MKPA PROTEIN 42 606 - -
Tsu02g00881 661 Pfam Gelsolin repeat 285 352 IPR007123 -
Tsu02g00881 661 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 42 606 - -
Tsu02g00881 661 MobiDBLite consensus disorder prediction 22 48 - -
Tsu02g00881 661 MobiDBLite consensus disorder prediction 61 84 - -
Tsu02g00881 661 Gene3D Protein tyrosine phosphatase superfamily 83 242 IPR029021 -
Tsu02g00881 661 Pfam Dual specificity phosphatase, catalytic domain 109 239 IPR000340 GO:0008138|GO:0016311
Tsu02g00881 661 CDD DSP 102 236 - -
Tsu02g00881 661 ProSitePatterns Tyrosine specific protein phosphatases active site. 185 195 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00881 Tsu-Chr2 7405839 7408865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00881 28 137 Protein tyrosine phosphatase (PTP) family AT3G55270 45.669 2.24e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00881 - - gmx:100802311 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00881 02 7405839 7408865 Tsu02g00881 02 7405839 7408865 ECH