Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00859 ATGGGAAGAACCAAAGTTTCCACCCTTTTTCCTTCCAATAACAACCATCATCACACTCTTCCTCTTTCCAATACCATTCACCAAACTCTTGTTAACAAACCCAATTCACACAAAAACCGTTTCCCCTTTTCAGTCTTGGAATTTTTCAGACGCTTTATCTATGGAAGGAAAGTTGATGGAGGTTCAAGAACCGAGGAAGAAGAGAAAGTGTATTCTTGGTTATATACCTTGGCTCAGTCTGAGAAAAACTTGGTCTTTGAGTACGTTAGGTCAACTGAAAGAGGCAATTTTACTGAAGCTGAGAGGAGGCTGCAGGAAAATGGCCCAAATGTTCCGCTCGAGTATTCTTTTCCAAGCTGGTGGAATCTTCTATGGAACGCGTTTTTCCATCCTTTCAATATGATTCTGATAGTTTTATCTTCTATGTCATTCATTGCCAGAGACTATCCCAATGGTTCAATCATGCTCATATTGGTTTTTATTAGTGTCATCCTTCGTTTCTGTCTGGAACATAAAAGCTCAAAAGCAGCTATGAAGCTTTCAGAATTTTTAAGATGTCCTATAAAAGTTCAAAGATGTGCTGGTAGAATTGAGCAGAAAGAACTGATAGTTCAAGTTGATCACAAGGATGTAGTTCCAGGTGACATTGTGATTTTCGAACCTGGCGACCTCTTTCCTGGAGATGTCAGACTGTTATCTTCAAATCACCTTGTTGTAAGCCAGGCCTCACTAACCGGAGAATCGTGGGCAACTAACAAAACTTCCGATGTTAGAGAAGATCACAACACTCCTTTACTAGATTTAAGGAACATTTGCTTTATGGGAACAAATGTGGTATCAGGTACTGGAACAGGTTTAGTTATTTCAACTGGATCAAATACTTACATGAGCACCATGTTTTCAAAAATTGGGAAGAAGAAGCCGCCAGATGACTTCGAAAAGGGTCTCAGATGGATATTTTACATGCTTATTTCAGTTATGCTTGTAGTTGTTACAATTATGTTTGTGACAGATTACACTACATCTCATAATTTGAGCAAGAGTGCTCTATTCGCCATCTCAGTTGCATCTGTCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTCGCGAAAGGAGCACTCGCTATGGCTAAAGATAGATGTATTGTAAAAAGTCTAACAACTATACGCGAGATGGGATCAATGGATATCCTTTGTATTGACAAGACAGGCACCCTAACAATGAATCATGCAATCTTGGTTAATCATCTTGATTGCAAGGGTTTACCCCAAGAAAAAGTTCTACGCTTCGCCTTCCTCAATTCTTACTTCAAAACTGAGCAAAAGTATCCTTTGGATGATGCAATTCAAGCACATGTATATTCAAATGGATTCAAGTTTCAGCCATCCAAGTGGAAGATGATAGATGAGGTGCCTTTCGATTTCATGAGAAGAAGAGTATCTGTCATGTTAGAAACAGACGACAAACACTCGCAGTTCTTCGGGAGGTTCATGGTAACAAAAGGAGCATTATTGGAAGTCATAAAAGTTTGTTCTTTTATTGAGAATTTTGACACAAATGAAATTTCTACCCTCTCCTCAGATGATTATCAGAGGATTTTAAATCTATCTGAAGAATTGAGCAATGAAGGTTTAAGGGTTATAGCAGTAGCTATAAAGAAGCTGGAAATGCATAAAACTTGTGAAACAAGTAATGGAAGCAAGAGAGGTGCCGATGATTTCGAAAGAGACATGATATTCCTTGGTCTCATAACATTTTTTGACCCACCTAAGGACTCGGCAAAGGAAGCACTTTGGCGTTTGGCTGAGATGGGAGTGAAAGCAAAAGTTTTAACAGGTGACTCACTTTCCTTAACCACAAGAATATGCAGAGAAGTTGGCATAAGTACCACTCATGTTATAACAGGACCTGAGCTAGAAGAATTTGATCAAGAAACTTTCCACGAGACTGTTAAAAGAGCCACGGTACTAGCCCGTCTCACTCCAACTCAGAAACTCCGTGTGGTGCAATCGCTGCAGACAATAGGAAACCATGTAGTTGGTTTCTTAGGAGATGGTATAAATGATTCACTAGCATTGGATGCTGCTCATGTAAGCATTTCAGTGGACTCGGGCGTAGCCATTGCCAAAGACATGGCAGATATAATCTTACTAGAGAAAGATCTCAATGTGCTCGTTGCAGGTGTTGAACATGGTCGTCTCACCTTCGGCAACACAATGAAGTATATAAAGATGTCAGTTATTGCTAACTTGGGAAGTACGATTTCACTCCTCATAGCAAAATTGATCCTTAAATATGAACCTTTAACTTGTAGACAGCTTCTTACACAAAATTTCATGTACAGCCTCGGACAAATCGTTATCCCTTGGGACAAAATCGgtgaagaaaatttgaaaactcCTCATAAGTGGTCAGAACGAGGCTTACCTATGTTCATATTATGGAATGGTCCAGTATGCACATTATGTGATATGGCAacacttttgtttcttttgttctATTACAAAGCTTATGATGATGTGAATGAGAATTTTTTTCATTCAGCTTGGTTCATTGAGGGTCTTCTCATGCAAACTCTCATTGTTCATTTGATGAGGACTGAGAAAATTCCTTTCATACAAGATATTGCTTCTTGGCCTGTGATTTTCTCAACTCTTTTGATATCTTCAATTGGAATTGCAATTCCATTTACTCCTATTGGGAAGGTTATGGGATTTACAATTCTACCCCTCTCATATTTAGGATTTTTGGCTGTTATTTTTGTAGGATATTTTACAATTGGTCAAGTGGTTAAGAGACTTTACATATTGGTTTATAAGAAATGGCTTtga 2841 0.383 MGRTKVSTLFPSNNNHHHTLPLSNTIHQTLVNKPNSHKNRFPFSVLEFFRRFIYGRKVDGGSRTEEEEKVYSWLYTLAQSEKNLVFEYVRSTERGNFTEAERRLQENGPNVPLEYSFPSWWNLLWNAFFHPFNMILIVLSSMSFIARDYPNGSIMLILVFISVILRFCLEHKSSKAAMKLSEFLRCPIKVQRCAGRIEQKELIVQVDHKDVVPGDIVIFEPGDLFPGDVRLLSSNHLVVSQASLTGESWATNKTSDVREDHNTPLLDLRNICFMGTNVVSGTGTGLVISTGSNTYMSTMFSKIGKKKPPDDFEKGLRWIFYMLISVMLVVVTIMFVTDYTTSHNLSKSALFAISVASVLNPQMLPLIINTCLAKGALAMAKDRCIVKSLTTIREMGSMDILCIDKTGTLTMNHAILVNHLDCKGLPQEKVLRFAFLNSYFKTEQKYPLDDAIQAHVYSNGFKFQPSKWKMIDEVPFDFMRRRVSVMLETDDKHSQFFGRFMVTKGALLEVIKVCSFIENFDTNEISTLSSDDYQRILNLSEELSNEGLRVIAVAIKKLEMHKTCETSNGSKRGADDFERDMIFLGLITFFDPPKDSAKEALWRLAEMGVKAKVLTGDSLSLTTRICREVGISTTHVITGPELEEFDQETFHETVKRATVLARLTPTQKLRVVQSLQTIGNHVVGFLGDGINDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYIKMSVIANLGSTISLLIAKLILKYEPLTCRQLLTQNFMYSLGQIVIPWDKIGEENLKTPHKWSERGLPMFILWNGPVCTLCDMATLLFLLFYYKAYDDVNENFFHSAWFIEGLLMQTLIVHLMRTEKIPFIQDIASWPVIFSTLLISSIGIAIPFTPIGKVMGFTILPLSYLGFLAVIFVGYFTIGQVVKRLYILVYKKWL 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00859 946 Gene3D - 414 590 IPR023299 GO:0000166
Tsu02g00859 946 TIGRFAM ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 68 945 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tsu02g00859 946 SUPERFAMILY HAD-like 577 734 IPR036412 -
Tsu02g00859 946 SMART Cation_ATPase_N_a_2 76 148 IPR004014 -
Tsu02g00859 946 Gene3D - 149 896 - -
Tsu02g00859 946 PRINTS Magnesium-transporting ATPase signature 899 920 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tsu02g00859 946 PRINTS Magnesium-transporting ATPase signature 744 759 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tsu02g00859 946 PRINTS Magnesium-transporting ATPase signature 814 830 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tsu02g00859 946 PRINTS Magnesium-transporting ATPase signature 436 449 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tsu02g00859 946 PRINTS Magnesium-transporting ATPase signature 315 331 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tsu02g00859 946 PRINTS Magnesium-transporting ATPase signature 794 807 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tsu02g00859 946 PRINTS Magnesium-transporting ATPase signature 849 870 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tsu02g00859 946 SFLD Haloacid Dehalogenase 384 736 - -
Tsu02g00859 946 PANTHER CATION TRANSPORTING ATPASE 55 945 - -
Tsu02g00859 946 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 156 449 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g00859 946 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 648 765 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu02g00859 946 Pfam haloacid dehalogenase-like hydrolase 398 699 - -
Tsu02g00859 946 Pfam Cation transporter/ATPase, N-terminus 98 141 IPR004014 -
Tsu02g00859 946 Gene3D - 399 723 IPR023214 -
Tsu02g00859 946 SUPERFAMILY Calcium ATPase, transmembrane domain M 98 943 IPR023298 -
Tsu02g00859 946 Gene3D - 186 290 - -
Tsu02g00859 946 Pfam E1-E2 ATPase 203 381 - -
Tsu02g00859 946 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 55 945 - -
Tsu02g00859 946 ProSitePatterns E1-E2 ATPases phosphorylation site. 404 410 IPR018303 -
Tsu02g00859 946 SFLD p-type atpase 384 736 IPR044492 -
Tsu02g00859 946 SUPERFAMILY Calcium ATPase, transduction domain A 201 301 IPR008250 -
Tsu02g00859 946 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 395 593 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00859 Tsu-Chr2 7251296 7255666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00859 108 809 Primary Pumps ATPases(2) AT1G10130 27.148 1.00e-59 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00859 K01531 - gmx:100795153 1564.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00859 02 7251296 7255666 Tsu02g00859 02 7251296 7255666 ECH