Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00858 ATGGTTTTTCATCTTAAAAATCTCCTTCATTCCTATCATTACAATCATGATAGCCCAAATCCTTCCCCTCAACAATCACCAGTTACACAAACTTCCTATGAAATACTTCATCATTTTCATATCCATATTCATACACTTCATATTGCTATTATCGCCACAGCTTGTTCTGTTACAACTGTTATGTTTCTTTTGATCCTTTTCATGTCTCTAAGGAGGAGCTACCATTCAAGAAGACATAACATTAACCATAATAACCATAATTATGTCCGAAGAAACACGCCTATATTGTTCGATGTCCATGGTTATAGAGATTCTACTATTTCAGATGatggtgatggtgatgatgatgagagGGTTATGGTTATTGATCACCCCATATGGTTAATCCGAACAATAGGGCTTCAACAACCGGTGATAGATTCGATTACAGTGTTGaaatatagaaaaaatgaaGGACTATTTGATGGAACAGAGTGTTCTGTTTGTTTAGGTGAAtttcaagaagaagagagtcTCAAACTTTTGCCTAAGTGTAGCCATGCTTTTCATGTACCTTGTATTGATACTTGGCTTAGATCACATAAAAATTGTCCGTTGTGTCGCGCACCGGTGGTTAATGATGCTGCAGAGGTGAGTGTCACAGTGACTGATCAGCTTGATTCAAGTATTTCTGGTGAGAGTTTGAACCAAGGACAGATGGAAAATTTTGATAATGTTGTTGTAGAAGGATTAGGATCACATAATGTAGGAGAATTAGAAATTATTATAGTTGATAATGATGATAGTGATTCTAGTGTATCATCTAGTGAaagagtaaataaaaataatactgcTTAA 837 0.3238 MVFHLKNLLHSYHYNHDSPNPSPQQSPVTQTSYEILHHFHIHIHTLHIAIIATACSVTTVMFLLILFMSLRRSYHSRRHNINHNNHNYVRRNTPILFDVHGYRDSTISDDGDGDDDERVMVIDHPIWLIRTIGLQQPVIDSITVLKYRKNEGLFDGTECSVCLGEFQEEESLKLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPVVNDAAEVSVTVTDQLDSSISGESLNQGQMENFDNVVVEGLGSHNVGELEIIIVDNDDSDSSVSSSERVNKNNTA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00858 278 SMART ring_2 159 200 IPR001841 -
Tsu02g00858 278 PANTHER RING-H2 FINGER PROTEIN ATL54 21 255 - -
Tsu02g00858 278 CDD RING-H2_PA-TM-RING 158 201 - -
Tsu02g00858 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 210 IPR013083 -
Tsu02g00858 278 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Tsu02g00858 278 SUPERFAMILY RING/U-box 149 207 - -
Tsu02g00858 278 Pfam Ring finger domain 158 201 IPR001841 -
Tsu02g00858 278 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 255 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00858 Tsu-Chr2 7247553 7248389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00858 120 205 C3H Transcription Factor Family AT4G33565 68.605 2.18e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00858 - - mtr:MTR_8g089880 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00858 02 7247553 7248389 Tsu02g00858 02 7247553 7248389 ECH