Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00857 ATGTTAGAAGGATTAGATGAAGAAGGGTGTGTTGAAGAACCAGGACAGAAGAAAAGAAGACTAAGTGTGGATCAAGTTAAGGCTTTAGAGAAgaattttgaagttgaaaatAAGCTTGAACCAGATAGAAAAGTGAAGCTTGCTCAAGAACTTGGTTTACAACCAAGACAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAAACTAAACAATTGGAAAGAGATTATGGTGTTCTTAAAGCCAATTATGATGCACTTAAGCTTAATTATGACAATCTTCAACGTGACAATGAAAACTTGCTCAAAGAGGTTAAGGAATTGAAATCAAGATTACAATTACAAGAAGAAAACACAGCCACTGAAAGTGATGTTTGTGTGAAACAAGAGTTGATAACATTGCAAGAATCAGACAACACTGATTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGACTGTTTCAAAAACGGCGATGTAGTAGCTTCTCTGTTTCCTCCGGATTTCAAAGATGGTTCTTCAGATAGCGACTCAAGTGCAATCTTGAACGAAGAAAACAACAATAACAGTCCCAACGCAGCGATTTCTTCATCTGGGGTTCTTCAAAATCATAACTTTTTGATGTCTCCCGGTTCTTCTTCGCTTAAGTTCAATTGTTCTGAATCGTCTTCGCCATCTTCAATGAGTAACAGTTGCTTTCAGTTTCAGACACAGTATGTGAAAATGGAAGAACATAATTTTCTTGGTGCTGATGAGACTTGTGATTTCTTCTCAGATGAACAACCACCAACTCTTCAATGGTATTGTTCTGAAGAGTGGAATTAa 843 0.3677 MLEGLDEEGCVEEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDNLQRDNENLLKEVKELKSRLQLQEENTATESDVCVKQELITLQESDNTDSDETAILRSDSKDLNYDCFKNGDVVASLFPPDFKDGSSDSDSSAILNEENNNNSPNAAISSSGVLQNHNFLMSPGSSSLKFNCSESSSPSSMSNSCFQFQTQYVKMEEHNFLGADETCDFFSDEQPPTLQWYCSEEWN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00857 280 PRINTS Lambda-repressor HTH signature 43 52 IPR000047 GO:0003677
Tsu02g00857 280 PRINTS Lambda-repressor HTH signature 52 68 IPR000047 GO:0003677
Tsu02g00857 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 272 - -
Tsu02g00857 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 272 IPR045224 GO:0003700
Tsu02g00857 280 MobiDBLite consensus disorder prediction 179 202 - -
Tsu02g00857 280 Gene3D - 15 79 - -
Tsu02g00857 280 ProSitePatterns 'Homeobox' domain signature. 47 70 IPR017970 GO:0000981|GO:0006355
Tsu02g00857 280 SMART HOX_1 15 76 IPR001356 GO:0003677
Tsu02g00857 280 Pfam Homeodomain 17 70 IPR001356 GO:0003677
Tsu02g00857 280 ProSiteProfiles 'Homeobox' domain profile. 12 72 IPR001356 GO:0003677
Tsu02g00857 280 Pfam Homeobox associated leucine zipper 72 114 IPR003106 GO:0006355|GO:0043565
Tsu02g00857 280 SUPERFAMILY Homeodomain-like 14 74 IPR009057 -
Tsu02g00857 280 CDD homeodomain 16 73 IPR001356 GO:0003677
Tsu02g00857 280 Coils Coil 71 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00857 Tsu-Chr2 7234810 7238297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00857 1 279 Homeobox Transcription Factor Family AT4G40060 43.607 3.56e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu02g00857 Homeodomain 5.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00857 K09338 - gmx:547564 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00857 02 7234810 7238297 Tsu02g00857 02 7234810 7238297 ECH