Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00848 ATGGACGAGGAAGAGCATGAGGTTTACGGAGGAGAGATCCCTGACGTGGCAGAGATGGAAGCTGACATTGACATGTCCGCCGCCGACGATGAAGCCAGTGGTATGAAGGAACTCGACGAGATGAGGCGCCGCTTGAAGGAAATGGAAGAAGAAGCCGCCGCTCTTCGTGAAATGCATGCTAAGGTCGAGAAGGAAATTGGCTCCGTTCAAGATCCTGCTGCTGTAGCTGCTTCTCAGGAAAACAGAGAGGAGGCTGATGCTCGGTCTGTTTTTGTCGGCAATGTTGATTATGCATGCACACCAGAGGAAGTGCAGCAACACTTTCAGTCATGTGGTACAGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAGGCTCTCCTGTTAACTGAATCTGAATTGCATGGACGTCAATTGAAAGTTCTGCCTAAGAGGACTAATGTCCCTGGAATGAAACAATACCGTCCTAGGCGATTCAATCCTTACATGGCATATGGCTTCAGGAGGCCTTATGCTCCTCCTTACATGTACTCCCCTTATGGATATGGGAAGGCTCCTAGGTTTAGAAGACCAAATCGTTACATGCCATATTATTAG 651 0.4762 MDEEEHEVYGGEIPDVAEMEADIDMSAADDEASGMKELDEMRRRLKEMEEEAAALREMHAKVEKEIGSVQDPAAVAASQENREEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEALLLTESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYAPPYMYSPYGYGKAPRFRRPNRYMPYY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00848 216 CDD RRM_II_PABPs 89 160 - -
Tsu02g00848 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Tsu02g00848 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
Tsu02g00848 216 Coils Coil 31 65 - -
Tsu02g00848 216 SMART rrm1_1 89 160 IPR000504 GO:0003723
Tsu02g00848 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 214 - -
Tsu02g00848 216 SUPERFAMILY RNA-binding domain, RBD 78 184 IPR035979 GO:0003676
Tsu02g00848 216 Gene3D - 13 171 IPR012677 -
Tsu02g00848 216 PANTHER - 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00848 Tsu-Chr2 7145724 7150825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00848 79 159 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 8.32e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00848 K14396 - gmx:100789721 368.237