Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00846 ATGGAAGCATTTGGCGGTTACTTAGTTGATGAGAAAGCCGTTAGGGTTGAAAACGCTTTCTTAGATTTCCTCAAAAGTTTCAGATCTGGACAACGAAATGAACTCTATTACGAAGCAGAGATTGAAGTGATGAGAGCTAACGAGTCAAACACGATGTTCATCGATTTCGACCATGTTATCAGATTCAGTGATCTTCTTCAGAAAGCTATCTCCGATGAATATTTGagGTTTGAACCTTACTTGCAGAATGCCTGCAAGAGGTTTGTTATGGAGCTTAAGCCAACTTTCATTTCTGATGATAGCCCTAACAAGGACATCAATGTTGCATTCTATAATATTCCAATTGTCAAGAGGTTAAGGGAATTGGCTACATCGGAGATTGGAAGGCTTGTATCTGTTACAGGAGTGGTAACGAGGACAAGTGAGGTTCGACCCGAGCTTCTTCAAGGGACTTTCAAGTGCCTAGAATGTGGCGGGGTTATAAAGAATGTTGAACAACAATTCAAGTATACTGAGCCAACGATCTGCCCAAATGCTACATGTAACAACAGAGCAAAATGGGCACTGCTGCGGCAAGAGAGCAAATTTACTGATTGGCAAAGGGTGAGAATGCAGGAGACGTCCAATGAGATACCTGCAGGCTCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTGGAACATGCTAGGGCTGGTGACACGGTTATTTTTACTGGCACTGTAATTGTAATACCTGATATATTGGCATTGGCATCCCCTGGAGAGAGATCAGAATGTCGTAGGGAAGCTTCTCAACGCAAGGGTTCATCTGGAAATGAAGGTGTGAGGGGCCTTAGGGCTTTGGGGGTCAGAGACCTCTCCTATCGTCTAGCTTTTATTGCTAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATTCAGATGAAGATGATCAGCAATTTACTGAACAGGAACTAGATGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTTGTTGAGAGTGTTGCTCCAACTATTTTTGGTCATCAGGATATAAAACGAGCAATCCTTCTTATGCTTATGAGTGGAGTCCATAAATCTACTCATGAAGGCATCAGTCTTAGAGGAGACATAAATGTTTGTATTGTTGGAGATCCTAGCTGTGCAAAGTCTCAATTTCTTAAATATACTTCAAGCATTGTTCCAAGATCTGTGTATACATCTGGTAAATCATCATCTGCTGCTGGATTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCTGACAATGGAATTTGCTGCATTGATGAATTTGACAAGATGGATATAAGAGACCAGGTTGCAATTCATGAGGCTATGGAACAACAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCTGCTGCCAACCCTGCTGGAGGACGGTATGATAGGTCTAAACCACTGAAGTACAATGTGGCTCTTCCACCGGCTATACTTTCTAGGTTCGATCTTGTATACATTATGATTGATGACCCAGACGATGTTACAGATTACCACATAGCTTCTCATATTGTCCGAGTTCATCAAAAGCGCGAAGAAGCTCTTGCTCCAACGTTCACTACAGCAGAACTGAAACGTTATATAGCCTATGCAAAAACTCTTAAACCAAAGCTAACGTCAGATGCAAGAAAACTACTGGTAGACTCTTATGTTTCTCTCCGTAGGGCTGATACAAATCCTGGCAGTAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCTTTAATCAGGCTGTCAGAGGCCGTTGCACGGTGTCATTTGGATAATCAGGTACAAACCCGTCATGTTCGTTTAGCAGTAAAACTGCTGCAAACATCTATAATAAGAGTGGAGTCCAGTGAGATTGATCTATCTGAGTTTCAAGATCAAGATGGGGACGAAGAAGCAGGTAGTGGTGATGGAAATGATAATGATGCTGATGATGGTCAAGTGGGAAGCTCTACCGCCCAGCAAGCCGCTGGAACTAACGAAAAACCAGCGGATGGATCCATCCCCCAAAGAAAGAAATCTACTGTAACTGATGAATACTTTCAGAGGATTACCAAGGCCCTTGTCATGCGTCTTAGACAGCACGAGGAGACTGTAATGCAACAAGAGCAAGAGGAGGCTGAAATGCAAAAAGAGAAAGATGACGAGGAGACTGAAAAGCGAAAAGGCTTGGCTGGGATGAGGCAACGAGATTTGATTAAATGGTATGTAGACCaacaaaatgagaaaaataattacAGTTCTGTGGAGGAGGCGAAAGTTGAAATTTCCCAAATTAAAGCAATTATAGAGATATTAATTCGAAGAGAGGGGCATCTGATAGTGATAGATGATGGCAGACAAACAGCAACAGAAGCTGCTGGTGCAGAACAATCCGAGTCTGCAGCTAGAAATGATAGAATTTTGGCTGTGGCTCCTAATTATGTCGTTGAATGA 2559 0.4216 MEAFGGYLVDEKAVRVENAFLDFLKSFRSGQRNELYYEAEIEVMRANESNTMFIDFDHVIRFSDLLQKAISDEYLRFEPYLQNACKRFVMELKPTFISDDSPNKDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICPNATCNNRAKWALLRQESKFTDWQRVRMQETSNEIPAGSLPRSLDVILRHEIVEHARAGDTVIFTGTVIVIPDILALASPGERSECRREASQRKGSSGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDSDEDDQQFTEQELDEVQRMRNTPDFFTKLVESVAPTIFGHQDIKRAILLMLMSGVHKSTHEGISLRGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDRSKPLKYNVALPPAILSRFDLVYIMIDDPDDVTDYHIASHIVRVHQKREEALAPTFTTAELKRYIAYAKTLKPKLTSDARKLLVDSYVSLRRADTNPGSRVAYRMTVRQLEALIRLSEAVARCHLDNQVQTRHVRLAVKLLQTSIIRVESSEIDLSEFQDQDGDEEAGSGDGNDNDADDGQVGSSTAQQAAGTNEKPADGSIPQRKKSTVTDEYFQRITKALVMRLRQHEETVMQQEQEEAEMQKEKDDEETEKRKGLAGMRQRDLIKWYVDQQNEKNNYSSVEEAKVEISQIKAIIEILIRREGHLIVIDDGRQTATEAAGAEQSESAARNDRILAVAPNYVVE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00846 852 MobiDBLite consensus disorder prediction 685 702 - -
Tsu02g00846 852 SMART mcm 115 653 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 Gene3D - 327 657 IPR027417 -
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 277 298 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tsu02g00846 852 Coils Coil 726 763 - -
Tsu02g00846 852 Gene3D - 710 852 - -
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein family signature 383 398 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein family signature 443 457 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein family signature 471 484 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein family signature 495 507 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 PRINTS Mini-chromosome maintenance (MCM) protein family signature 522 530 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 MobiDBLite consensus disorder prediction 663 680 - -
Tsu02g00846 852 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 10 801 - -
Tsu02g00846 852 SUPERFAMILY Nucleic acid-binding proteins 20 249 IPR012340 -
Tsu02g00846 852 Gene3D - 8 115 - -
Tsu02g00846 852 Pfam MCM OB domain 119 247 IPR033762 -
Tsu02g00846 852 Pfam MCM P-loop domain 330 552 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 ProSitePatterns MCM family signature. 451 459 IPR018525 GO:0003677|GO:0005524|GO:0006260
Tsu02g00846 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 656 IPR027417 -
Tsu02g00846 852 ProSiteProfiles MCM family domain profile. 342 548 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 CDD MCM6 345 651 - -
Tsu02g00846 852 Gene3D - 146 197 - -
Tsu02g00846 852 MobiDBLite consensus disorder prediction 663 717 - -
Tsu02g00846 852 Pfam MCM N-terminal domain 18 112 IPR027925 -
Tsu02g00846 852 Pfam MCM AAA-lid domain 567 652 IPR041562 -
Tsu02g00846 852 Coils Coil 790 810 - -
Tsu02g00846 852 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 801 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g00846 852 Pfam MCM6 C-terminal winged-helix domain 713 851 IPR041024 -
Tsu02g00846 852 MobiDBLite consensus disorder prediction 739 766 - -
Tsu02g00846 852 Gene3D - 119 247 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00846 Tsu-Chr2 7130504 7135912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00846 1 852 Core DNA Replication Machinery Family AT5G44635 71.098 0.0 1266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00846 K02542 - gmx:100787290 1353.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00846 02 7130504 7135912 Tsu02g00846 02 7130504 7135912 ECH