Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00833 ATGAAGAATATGCATAATCACACCCAAATTACACAACAACAAAATGATACAAATATTCCCCTTCACAACCTCAACGAACTAAGCACCAAAATGGATTCTATTCAACGCTACATATCCCAATCCATCAACACCAACACTCTCCTCCCCAAACAACACTTAGATACACTCTCCAACCAAATCTCAACCACCATTCGCCAAGTCATTATTAACGCAACGGCTCTTCTCGCCACATATCCCGTAACACCAGCAGTTCATCAAACCACATGTTACGAGACAGATGGCGAGAATGTAACACTACTCACCACATGTCCTGCAACAATCACTGTCTCACCAAGTAAATGTTACGGGACAAGTGATGAGAACAATAGTTGCATTAATAATGTTGTGGCGAATTCCACGATAGATATCGTGGAACTCGACGCAGTGGAACTTCTCGCAAATCACGTTCACGTCTGTGAAATTTGCGGGAAAGGTTTCACGCGCAACGCGAATTTGCGTATGCACATGCGCGCGCACGGAGACAAATTTAAAACACCGGAAGCTTTACGTTGCGTGAGGGAAACGCGCTTATCGGCAACGCGATTTTCTTGTCCTTTTGAAGGATGCAAACGGAACAGAATACACAAGAAGTTCAAGCCATTGAAATCAGTGTTCTGTTTGAGAAACCATTTCAAGAGAAGTCATTGTCCGAAAACTTACATGTGCGATCGGTGTCGGAGAAAGAGTTTTGCGGTGGTTTCGGATTTGAAGAGTCACATGAAACAGTGTAAGGGAGAGTCCACGTGGAAGTGTTCATGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAACGGTTTGAGGGACATTCGCCGGCGGTGGTtgaagaagagaaaggaaaaacaatGGCGGCGGAAGAATGTGTGGATGAGATTATGACTAAGGAAAGTGATTGTTTGAATGGGTTACCTGAAGATTTCTTTGATGATTTGGACAAATTTTGGGTTTGA 999 0.4284 MKNMHNHTQITQQQNDTNIPLHNLNELSTKMDSIQRYISQSINTNTLLPKQHLDTLSNQISTTIRQVIINATALLATYPVTPAVHQTTCYETDGENVTLLTTCPATITVSPSKCYGTSDENNSCINNVVANSTIDIVELDAVELLANHVHVCEICGKGFTRNANLRMHMRAHGDKFKTPEALRCVRETRLSATRFSCPFEGCKRNRIHKKFKPLKSVFCLRNHFKRSHCPKTYMCDRCRRKSFAVVSDLKSHMKQCKGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEEEKGKTMAAEECVDEIMTKESDCLNGLPEDFFDDLDKFWV 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00833 332 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 8 308 - -
Tsu02g00833 332 SUPERFAMILY beta-beta-alpha zinc fingers 149 173 IPR036236 -
Tsu02g00833 332 Pfam Zinc finger, C2H2 type 150 172 IPR013087 -
Tsu02g00833 332 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 8 308 IPR044300 GO:0010044|GO:0010447
Tsu02g00833 332 SMART c2h2final6 150 172 IPR013087 -
Tsu02g00833 332 SMART c2h2final6 195 228 IPR013087 -
Tsu02g00833 332 SMART c2h2final6 233 254 IPR013087 -
Tsu02g00833 332 Gene3D Classic Zinc Finger 149 172 - -
Tsu02g00833 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Tsu02g00833 332 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Tsu02g00833 332 Gene3D Classic Zinc Finger 231 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00833 Tsu-Chr2 6993554 6994552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00833 119 294 C2H2 Transcription Factor Family AT1G34370 51.099 2.92e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g00833 zf-C2H2 3.4e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00833 - - pvu:PHAVU_002G256900g 344.354