Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00829 ATGGCTTACAACAACATGCACCATCTTCATCATCCTAATCAATTTGATATTCAGCAAATTTTATCAGAAGCACAATATAGATGGCTTCGTCCACCTGAAATTTGCCAAATTCTCACTAATCATAACAACTTTCAGATTTCTTCAGAACCTTCATATGTGCCTCCAAGTGGTTCACTTTTCCTATTTGATCGTAAGGTGACGCGATACTTTCGAAAAGATGGTCATAATTGGAGGAAgaaaaaagatggaaaaactGTCAGGGAAGCTCATGAAAGACTAAAGGTTGGAAGTGTTGATGTATTGCACTGCTACTATGCTCATGGAGAACAAAATGATAATTTTCAAAGACGAACTTACTGGATGCTTGAGGAGGAACTCTCACACATTGTTCTAGTCCATTATCACGAAGTGAAGGGAACCAAGGCAACTTTACTATGCAccaaagaaaatgaagaatctCATCCTCATGCTCAACAAATATACAAAGTTATGTCCAACACAGAGATGGAGACTTCTTTACTGTCTAGCACGAACACTGCACAATCATCAGAATATGATGAAACTGAATCAGCATTCAATGGCCATGCAAATTCAGATTTCTACTCTTTTCATGAGCTGCAACACCCTGTTGTTCAGAAGATTAAAGCTCAAATCGCTGATTCTAACTGTCCTCTACCATTCAAAGATGATCAACAAAGGTTACCTGTCATTCCTAAGGTGGATTATATCTCACTCAGTCAAGCTAATGAAACCAAATGCCTTAATAGTGTTGGATTCACATGTGAACTCTCAAAAATCCTTGGCTACTCATCATGGCAAGATACTTTAGAGAATTCTGGAAGTGGAAGTGATAATATGGGAATAAATAGTACTTCTCAAGGATTTGAGccttctggttttagttcttTAAGCACATTCACTTGGCCCAAAGATGGCGCATATTTGGGCTCAACGTGTGAGGTTAGTTATAGCGACAATGAGAAGGAAGTTAATGAAGTTGAttttcaacaaaccttggaaCAGTTTCTTATTCATCCACACCAACAACACAAGGTTCTTATGCAGAATAGCCCTCACGAAAAACTGTTAAAAGCAGAAGAGTTAAAATCGGATCTAGAGGTTGGTAGAAGCCTAGATGGAATACAAGCCACTCATTTCACTTCAAAGAAGACTCTATTAGATGTATCTATGGCAGAAGAAGGCCTGAAGAAGCTCGACAGTTTCAATAGATGGATGAGTAAAGAACTAGGAGACGTGGAAGAATCGAGCAAAAAATCCACTTCTAGTGCTTATTGGGATACAGTTGAAAGCGAAAATGGTGTTGACAGTAGAACTATTCCTTCCCTAGTGCACCTGGAAAACTATGTACTAGATCCATCTATTTGCTATGATCAGCTTTTCAGCATCATCGATTATTCCCCATGCTGGACATTCGAAGACTCCGAAATTAAGGTTCTCATTTCAGGGCGATTCTTAAAGGGTCAAAATGAAGCAGAAGATTGTAAATGGTCATGCATGTTTGGCGAGGTAGAAGTGCCAGCGGAGATAATCGGGAACGGTGTTCTCTGTTGTCATACTCCTCCGCACAAGGCTGGCAGGGTTCCTTTCTATGTAACATGTTCTAATAGGTTAGCATGTAGTGAAGTGCGCGAATTTGATTTCCGAGCCAATTATACTCAAGAAGTCAACACTGGAGGCGAGAGCAGAAGCAGCAATACTTTCGATACTTTTAATAAACGATTTGGTGAACTGTTGTCTCTGGAGCATGACATCCCTCAGAGTTTAGATTCAATTACTGTGAATGAGAATTCTCAACTGAGAAGTAAAATCAGTTCATTGCTTAGGAGGGAGGATGGTGAATGGTACAAACTACTGAAATTTACTCTAGAGAAAGAATTTTCTCCGGAGCTTGTACAGGAACAGCTGCttgaaaatcttctaaaagataAGTTACATGCATGGCTCCTTCAGAAAACAACTGAAGATGGGAAAGGTCCAAATGTATTAGATGAAGGTGGGCAAGGTGTGCTTCATTTAGCAGCTGCTCTTGGCTACAATTGGGCCTTAGAACCAACAATAGTTGCCGGTGTGAATGTGAACTTCCGCGATGTAAATGGATGGACTGCTCTTCATTGGGCAGCGTTGTGTGGCAGAGAGCGCACGGTTGTTTCTCTCATAGCTCTTGGAGCAGCACCAGGAGCACTTACTGATCCATGCCCACAACATCCTTCTGGTAGAACACCGGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCAGGTTATCTTGCAGAATCTTTCCTAAGTGCACAACTCGAGTCTATTGATTTGAAAAGAGGTGCGGGGGAAAGTTTTGGAACAAAAGTAGTACAAAGAGTTCAAGAACAAAACACTGCTCAACTTAACAGTGAGGGAATCTCACATGAACTGTCATTGAAAGATTCACTGGCTGCAGTGTGCAATGCAACTCAAGCTGCTGCTCGTATTCATCAAGTTTTCAGAGTTCAATCATTCCAGAGAAAACAACAAAAGGAATATGGTGATGACAAATTAGGAATATCTGATGATCGTGCTCTTTCACTAATAGCAGTGAATGCAAAGTCGCACAAGTCTGGACAACGTGATGAGCCTGTTCATGTTGCTGCAACACGAATTCAGAACAAGTTCCGCAGTTGGAAAGGCCGAAAAGATTTTTTGATTATTCGACAGCGAATTGTAAAAATACAGGCTCATGTGAGAGGTCACCAGGTTAGGAAAAACTGTGGGAAGATAATTTGGTCAGTTGGGATCATGGAAAAGGTTATATTACGTTGGCGCCGGAAAGGTAGTGGTTTGCGTGGGTTTAAATCAGAGGCTGTTTCTGAGGGAACTGTGGTACAAGGTGTATCGTCTTCCACTGAGGATGACTACGACTTTTTGAAAGAAGGCAGAAAGCAAACTGAGAAAAGGTTGGAGAAAGCACTTGCTAGAGTGAAGTCAATGATACAATATCCAGATGCAAGAGACCAATATCACAGGCTATTGAATGTTGTAACTGAGTTACAAGAAAATCAGATAAAGCAAGATTGGAATTTTTGCAATTCAGAAGAAACAAGACAATTCAATAACCTCATTGATCTTGAAGCGTTGTTAGATGAAGATACTTTCATGCATACAGCTACTTAG 3168 0.3958 MAYNNMHHLHHPNQFDIQQILSEAQYRWLRPPEICQILTNHNNFQISSEPSYVPPSGSLFLFDRKVTRYFRKDGHNWRKKKDGKTVREAHERLKVGSVDVLHCYYAHGEQNDNFQRRTYWMLEEELSHIVLVHYHEVKGTKATLLCTKENEESHPHAQQIYKVMSNTEMETSLLSSTNTAQSSEYDETESAFNGHANSDFYSFHELQHPVVQKIKAQIADSNCPLPFKDDQQRLPVIPKVDYISLSQANETKCLNSVGFTCELSKILGYSSWQDTLENSGSGSDNMGINSTSQGFEPSGFSSLSTFTWPKDGAYLGSTCEVSYSDNEKEVNEVDFQQTLEQFLIHPHQQHKVLMQNSPHEKLLKAEELKSDLEVGRSLDGIQATHFTSKKTLLDVSMAEEGLKKLDSFNRWMSKELGDVEESSKKSTSSAYWDTVESENGVDSRTIPSLVHLENYVLDPSICYDQLFSIIDYSPCWTFEDSEIKVLISGRFLKGQNEAEDCKWSCMFGEVEVPAEIIGNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRANYTQEVNTGGESRSSNTFDTFNKRFGELLSLEHDIPQSLDSITVNENSQLRSKISSLLRREDGEWYKLLKFTLEKEFSPELVQEQLLENLLKDKLHAWLLQKTTEDGKGPNVLDEGGQGVLHLAAALGYNWALEPTIVAGVNVNFRDVNGWTALHWAALCGRERTVVSLIALGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSAQLESIDLKRGAGESFGTKVVQRVQEQNTAQLNSEGISHELSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEYGDDKLGISDDRALSLIAVNAKSHKSGQRDEPVHVAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNCGKIIWSVGIMEKVILRWRRKGSGLRGFKSEAVSEGTVVQGVSSSTEDDYDFLKEGRKQTEKRLEKALARVKSMIQYPDARDQYHRLLNVVTELQENQIKQDWNFCNSEETRQFNNLIDLEALLDEDTFMHTAT 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00829 1055 ProSiteProfiles Ankyrin repeat profile. 705 737 IPR002110 GO:0005515
Tsu02g00829 1055 Coils Coil 971 991 - -
Tsu02g00829 1055 Gene3D - 633 792 IPR036770 -
Tsu02g00829 1055 SMART iq_5 878 900 IPR000048 GO:0005515
Tsu02g00829 1055 SMART iq_5 901 923 IPR000048 GO:0005515
Tsu02g00829 1055 Gene3D Immunoglobulins 462 558 IPR013783 -
Tsu02g00829 1055 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 11 1019 - -
Tsu02g00829 1055 ProSiteProfiles CG-1 DNA-binding domain profile. 17 143 IPR005559 GO:0003677
Tsu02g00829 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 872 927 IPR027417 -
Tsu02g00829 1055 ProSiteProfiles IQ motif profile. 880 908 IPR000048 GO:0005515
Tsu02g00829 1055 Pfam CG-1 domain 23 136 IPR005559 GO:0003677
Tsu02g00829 1055 Gene3D - 878 925 - -
Tsu02g00829 1055 SUPERFAMILY E set domains 469 554 IPR014756 -
Tsu02g00829 1055 ProSiteProfiles IQ motif profile. 902 926 IPR000048 GO:0005515
Tsu02g00829 1055 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 11 1019 - -
Tsu02g00829 1055 SUPERFAMILY Ankyrin repeat 651 766 IPR036770 -
Tsu02g00829 1055 SMART ANK_2a 744 773 IPR002110 GO:0005515
Tsu02g00829 1055 SMART ANK_2a 705 734 IPR002110 GO:0005515
Tsu02g00829 1055 Pfam Ankyrin repeats (3 copies) 677 767 IPR002110 GO:0005515
Tsu02g00829 1055 Pfam IQ calmodulin-binding motif 904 921 IPR000048 GO:0005515
Tsu02g00829 1055 SMART CG_1_2 20 138 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00829 Tsu-Chr2 6960593 6967990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00829 61 1051 CAMTA Transcription Factor Family AT2G22300 48.541 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Tsu02g00829 CG-1 3.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00829 K21596 - gmx:100798875 1513.05