Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00827 ATGGCAGAAGTTTCAACGAGAAAGGCgaaaagaaagaacagaacccTAAAACCTCAGGACGCTGAACTCGACCGTTTCGACTCACTTCCATGGAACTCTTCTGTCCCTCAACCTACTGAAAACGATGACAACTCGTTTTCACTCTTCACTGGCTCCAATGAACTCGAAGGAGGTTTTCTTTCACTGGAGGAGATTGATGAAGCTGAGTATGGTTTAGATATTCCCGATCCTGAAAATCATGACAGAAAGCACAATTCTAAAGAGGACAAGAAGTTGAATAATCAGAAGCAGGACGGTGCTGGTAGTGATGGAGAAACAGCGAAGGACGAGAGCATCAAGTCTaaagtgaagaaaaagaaaaagaagaaaaacaaggaTGCAAAAGAAAACCAGAAAGTTCAACATTCAAATACtgGTGCGGCAGCTGTTGTGAAGGACACTGCTGGGGAAGAGAATATTGATGAAGCTGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCTCTTAATGAAAGCGATACACAAACTGGGATTCAAGGAACCAACACCGATACAAAAAGCTTGTATTCCTGCTGCTGCTCATCAAGGGAAGgatgtTATTGGTGCTGCAGAGACGGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTTCAACGTCTTTTGGAGGAGCGCGACAAGGCTGCGAATATGGATTCAGAAAAgggtgaagaagcagaaaaaAATGCTCCTACGGGCCTTTTGAGGAGTCTTATTATTGCTCCGACCAGAGAACTTGCACTTCAGGTCAAAGATCATCTGGAAAAAGTAGCCAAGCATATTAATGTTAGGGTGACTGCTATAGTTGGTGGTATTTTACCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGGTCTGAAATTGTGGTCGCTACTCCAGGGAGGTTATGGGAACTTATGTCATCTGGAGAAAAACACCTGGTTGAGTTACATTCACTGTCTTTTTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCTATAATTGACATGCTGCCCATGTCAAATATCTCTGGTGAAGATAATTCTCAAGATGCACAAAATTGTGTTACAGTTTCTAGCttccaaagaaagaaaaggcaAACTCTTGTTTTCTCAGCAACTGTCGCACTGTCCGCTGATTTTCGCAAGAAGTTAAAGCGTGGTTCAATGCAGAAAAAGCAACCATCAACAGATAGTTTGGATTCTATTGAAAATCTTTCTGAGCGTGCAGGAATGAGACCCAATGCTGCAATTATTGATCTTACCAGTGCATCAATATTAGCAGCTAAGATTGAAGAGTCCTTTATTGAATGCACGGAAGATAATAAAGATGCACATTTGTATTATATTCTTACTGTCCATGGTCAAGGCCGCACAATAGTTTTCTGTACCTCAATTGCAGCTTTACGCCATATTTCTTCTATATTGCGCATTCTTGGCATCAATGTTTGGACCCTTCATGCTCAAATGCAACAGCGAGCGCGTTTAAAGGCCATGGACCGCTTTCGCGAAAATGACAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGCGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGgtttatgtTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAGGATACATCAAAGTTTGCTTCGTTATGCAAGTCATTTTCAAAGGATAGCTTTCAGCGGTTTCCTTTAGAGAACTCATATATGCCAGAGGTTCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACTAGGAAGGATTCCCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGATTTAGTCACTGAAAATTATGACAGTGAGGAGGAACAAGTTAATAAATGTAGGCAAAAGAAAGCAAGCTCTAAGCAATTGAAGAGATTGCAGACGGAGCTCAGTATGCTGATTTCACGTCCTTTGCAATCAAAAACATTTTCACATCGATATTTAGCTGGGGCTGGTGTAACACCCCTCTTGCAGGAACAATTGCAACAATTATCAAGGCAAAAATTAAGTGATCGCCAGGGTGCAGTATTCGGCAAAAAGGGAAAATTGGTTGTGATCGGTCAAGATTGTATAGACGCACTTCATGCACTTCGGAGTGCTGGGGAAGAGGTGCGCATGGATATCAAGGATTCAACACGACAAAAAAATACTGtgaattcaaaaagaaaaagaaaagaggagAAAACACGTTTGCGTGATCAGcgtaaaaagaagaagagagagcaAAACCAGGAAgatgaataa 2382 0.3904 MAEVSTRKAKRKNRTLKPQDAELDRFDSLPWNSSVPQPTENDDNSFSLFTGSNELEGGFLSLEEIDEAEYGLDIPDPENHDRKHNSKEDKKLNNQKQDGAGSDGETAKDESIKSKVKKKKKKKNKDAKENQKVQHSNTGAAAVVKDTAGEENIDEAEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIFQRLLEERDKAANMDSEKGEEAEKNAPTGLLRSLIIAPTRELALQVKDHLEKVAKHINVRVTAIVGGILPEKQERLLKARSEIVVATPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISGEDNSQDAQNCVTVSSFQRKKRQTLVFSATVALSADFRKKLKRGSMQKKQPSTDSLDSIENLSERAGMRPNAAIIDLTSASILAAKIEESFIECTEDNKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDSFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKCRQKKASSKQLKRLQTELSMLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLSRQKLSDRQGAVFGKKGKLVVIGQDCIDALHALRSAGEEVRMDIKDSTRQKNTVNSKRKRKEEKTRLRDQRKKKKREQNQEDE 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00827 793 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 408 IPR014001 -
Tsu02g00827 793 MobiDBLite consensus disorder prediction 752 773 - -
Tsu02g00827 793 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Tsu02g00827 793 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 83 714 - -
Tsu02g00827 793 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 330 338 IPR000629 -
Tsu02g00827 793 CDD DEADc_DDX24 170 435 - -
Tsu02g00827 793 Coils Coil 754 790 - -
Tsu02g00827 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 582 IPR027417 -
Tsu02g00827 793 MobiDBLite consensus disorder prediction 752 793 - -
Tsu02g00827 793 MobiDBLite consensus disorder prediction 1 146 - -
Tsu02g00827 793 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g00827 793 MobiDBLite consensus disorder prediction 73 113 - -
Tsu02g00827 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 613 IPR001650 -
Tsu02g00827 793 Coils Coil 642 662 - -
Tsu02g00827 793 Pfam Helicase conserved C-terminal domain 458 565 IPR001650 -
Tsu02g00827 793 Gene3D - 442 684 IPR027417 -
Tsu02g00827 793 SMART helicmild6 485 566 IPR001650 -
Tsu02g00827 793 MobiDBLite consensus disorder prediction 30 54 - -
Tsu02g00827 793 Pfam DEAD/DEAH box helicase 183 391 IPR011545 GO:0003676|GO:0005524
Tsu02g00827 793 Gene3D - 109 407 IPR027417 -
Tsu02g00827 793 CDD SF2_C_DEAD 446 575 - -
Tsu02g00827 793 PANTHER RNA HELICASE 83 714 - -
Tsu02g00827 793 SMART ultradead3 178 421 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00827 Tsu-Chr2 6943270 6953294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00827 160 606 Eukaryotic Initiation Factors Gene Family AT5G11200 26.526 3.83e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00827 K14805 - gmx:100806018 1162.9