Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00811 ATGTCCAATTTAAAGTATGATGTGTTCCTGAGCTTTAGAGGAGAGGACACTCGCGAAAACTTCACGAGTCATCTTTATGCAGAATTGTGTAGGAAAACGATTGAGACATTCATAGATAATAGACTTGACAGAGGCGAAGAAATTTCACCAGCACTGTACAGAGCAATAGAAGAATCAAAGATTTATGTGATCATTTTGTCAGAACACTACGCTTCTTCAAGTTGGTGCTTAGATGAACTGACAGAGATACTGAAATGTAAGGAGAGATATGGAAGGGAAGTCATACCTGTGTTCTATAAGGTGGATCCATCAAATGTTAGGCATCAGAGACACAGTTATGCAGACGATTTTGTTAAGCACCATCAACGATTTGGTGGCAAAGTGGATGCGTGGAAGGCTTCTCTAACCCAAGTAGCTGGACTCTCAGGCTGGGATTCACAAGTAACCAGACCAGAAAGCACACTTGTTTCAGAGATTGTGAaagatattttgaaaaaattgaatagtTGTTTCTTAAGCAATTATGAAGGAATGACGGGAATTGACATGCATATTGAACAAATCCAATCGTTGTTGCTGCTTGAGTTGCCGACTGTTCGTATGATAGGGATATGGGGCATGGGAGGGATAGGCAAAACAACAATTGCTAGTGCAGTTTTTGAAAAACTCGCAACTCAGTTCTGTTCGAAAAGCATCATTCTAAATGTTCAACAAGAAATAGAAAGAGTTGGACTAGACCATGTAAAAAGAAAATACTTATCAAAACTTCTAGGGGAAGACATTCCATCCTCTGAAcacaatttttcatttgatCCAAGGCTCAAACGGACAAAGGTTCTTCttgtttttgatgatgtgaaaGATTCTGATCAACTTAAAGATTTAATTGGAACACATAGTAACTTTGGCCAGGGGAGTAGAATCATTGTGACTAGTAGAGATAGGCAAGTGCTTGAGAATGCCAATGCTGATGAAATATATCAAGTTGGGGAAATGGATTATCAAGATTCTCTACAACTCTTCTGTTTATTTGCctttaaacaaaacaatccaaaagaATCTTTTTTGAGATTAACAGAAAAGGTTTTAAATTATGCTCAAGGGCTTCCATTAGCTCTCAAAGTTTTGGGCTCATTGCTTTATGGCAAAACGAAGGAAGTATGGGAAAGTCAGCTGCAAAAGATCAAAAAGCTTCCCGATATTAAAATTTTTAGATTGTTGAAGTTAAGTTATGATGGACTTGACGACGATCAAAAAGATATATTTCTTGACATAGCTTGTTTCCATAGAGGACAATTTGAGAAAGATGTAGCATTAACATTGGATTCTTGTGGTTTCTCTGCTTACATTGGAATGGATGTTCTCAAAGATAGGTCCCTTATATCTATTTCAGAATATGGTACTGTTTGGATGCATGATCTAATACAAGAAATGGGGCATGAAATTGTTAGGCTTCAATGTGTCGATGATCCTGGAAAACGTAGTCGATTATGGAAGCCTAGTGATATTTACGATGTTTTAAGCAAGAAAATGGGAACCAATAAGATCCAGTGTATATTCGTAAACATGTGGGAAATGAGTGCAATGACAGAAATAAAAGTTCAACTAGATGCTGAAACATTCGAGGAAATGCATAATCTTAGAATGATCAAGTTCTATAATCAATATTGGGAACCTGTGACCTTTTATGCGTTTCTTAAGAGCTTTCCTAAGCatttaaaatttctttgttGGGATGGCTTCCCTCAAAGATCTTTGCCACAAGACTTTTGCCCAAAAAATCTTGTTATACTTCATATGCCTCACAGCAATCTTGAACAACTTTGGGAGGGGGATCAG 1839 0.36 MSNLKYDVFLSFRGEDTRENFTSHLYAELCRKTIETFIDNRLDRGEEISPALYRAIEESKIYVIILSEHYASSSWCLDELTEILKCKERYGREVIPVFYKVDPSNVRHQRHSYADDFVKHHQRFGGKVDAWKASLTQVAGLSGWDSQVTRPESTLVSEIVKDILKKLNSCFLSNYEGMTGIDMHIEQIQSLLLLELPTVRMIGIWGMGGIGKTTIASAVFEKLATQFCSKSIILNVQQEIERVGLDHVKRKYLSKLLGEDIPSSEHNFSFDPRLKRTKVLLVFDDVKDSDQLKDLIGTHSNFGQGSRIIVTSRDRQVLENANADEIYQVGEMDYQDSLQLFCLFAFKQNNPKESFLRLTEKVLNYAQGLPLALKVLGSLLYGKTKEVWESQLQKIKKLPDIKIFRLLKLSYDGLDDDQKDIFLDIACFHRGQFEKDVALTLDSCGFSAYIGMDVLKDRSLISISEYGTVWMHDLIQEMGHEIVRLQCVDDPGKRSRLWKPSDIYDVLSKKMGTNKIQCIFVNMWEMSAMTEIKVQLDAETFEEMHNLRMIKFYNQYWEPVTFYAFLKSFPKHLKFLCWDGFPQRSLPQDFCPKNLVILHMPHSNLEQLWEGDQ 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00811 613 Pfam TIR domain 5 177 IPR000157 GO:0007165
Tsu02g00811 613 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 610 IPR044974 GO:0006952
Tsu02g00811 613 Pfam NB-ARC domain 183 396 IPR002182 GO:0043531
Tsu02g00811 613 ProSiteProfiles TIR domain profile. 4 167 IPR000157 GO:0007165
Tsu02g00811 613 PRINTS Disease resistance protein signature 366 380 - -
Tsu02g00811 613 PRINTS Disease resistance protein signature 201 216 - -
Tsu02g00811 613 PRINTS Disease resistance protein signature 273 287 - -
Tsu02g00811 613 SMART till_3 5 141 IPR000157 GO:0007165
Tsu02g00811 613 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 144 IPR035897 -
Tsu02g00811 613 Gene3D - 331 415 IPR042197 -
Tsu02g00811 613 Gene3D - 1 169 IPR035897 -
Tsu02g00811 613 Gene3D - 170 328 IPR027417 -
Tsu02g00811 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 425 IPR027417 -
Tsu02g00811 613 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 610 - -
Tsu02g00811 613 SUPERFAMILY "Winged helix" DNA-binding domain 402 507 IPR036390 -
Tsu02g00811 613 Pfam Leucine Rich Repeat 594 613 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00811 Tsu-Chr2 6822275 6836669 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00811 2 613 WRKY Transcription Factor Family AT4G12020 35.144 4.62e-99 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00811 - - ccaj:109803335 746.888