Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00804 ATGTCTGATCCAAAGTATGATGTGTTCCTGAGCTTTAGAGGAGAGGACACTCGCGGCAACTTCACGAGTCATCTTTATGCAGAATTGTGTAGGAAAAAGATTGAGACATTCATAGATAATAGACTTGGCAGAGGTGAAGAGATTTCACCAGCACTGTACAAAGCAATAGAAGAATCAAAGATTTATGTGATCATTTTGTCAGAACACTATGCTTCATCAAGTTGGTGCTTAGATGAACTGACAGAGATACTGAAATGTAAGGACATATATGGAAGGGAAGTCATACCTGTGTTCTATAAGGTGGATCCATCAAATGTTAGGCATCATCAACGATTTGGTGACAAAGTGGACGCATGGAAGGCTTCTCTAACCCAAGTAGCTGGACTTTCAGGCTGGGATTCAGAAAAAACCAGACCAGAAAGCACACTTGTTACAGAGATTGTGGaagatattttgaaaaaattgagtaGTTGTTTCTTAAGCGATTATGAAGGAAAGCCGGGAATTGACATGCATATCGAACAAATCCAATCTTTGTTGCTCCTCGAGTTACCAAATGTCCGCATCACAGGAATATGGGGCATGGGAGGGATAGGCAAAACAACAATTGCCAGTGCAGTCTTTGAAAAACTCACAACTCAGTTCAGTTACAAAATCATCATTCTAAATGTTCAACAAGAAATAGAAAGAGTTGGACTAGACCATGTAAAAAGCAAATACTTATCGCAACTTCTAGGGGAAGACATTAAATCCTCTGAAAACAACTTTTCATTTGATCCAAGGCTCAAACGGACAACGGTTCTTCttgtttttgatgatgtgaaaGATGCTGATCAACTTAAAGATTTAATTGGAACACATAGTAACTTTGGCCAGGGGAGTAGAATCATTGTGACTAGTAGAAACCAGCAAGTGCTTCAGAATGCTAATGCTGATAATATATATCAAGGAAAGGGAACAGATGCAATCCAGTGTATATTTCTAAACATGAAGGAAATAAAGAAAGTTCAACTACATGCTGATACATTTAAGAAAATGCATAATCTTAGAATGATCAAGTTCTACAATTACTTTGGGAATGGCTCAAATGTGACCTTTCATGCGTTTCTTAAGAGTTTTCCTAatgatttaaaatttcttcattGGGAATACTTCCCTCAAAGATCTTTGCCGAAAGACTTTTGCCCAGAAAATCTTGCAACACTTAATATGTCTTATAGCGATCTTGAACAGCTTTGGGAGGGGATCAGGCGCTATGCGCCCGCGCGGGTATGTTCTGGGCGCGGGGTGCAGGTTTTGCTGTTGTCTGGTGACCGCGTGCGGCGCAGCCTGGCTTTACCAAATTTGAAAAGGCTTAACCTTAGGTATTCTAAGAAGCTGATAGCAGTTCCAGACCTCTCTTTCTGTCCAAAGATTGAAGAAGTAATTCTTAGTGGTTGTGTAAGTTTGACACAAGTTAACTCCTCTAGCTTCCTCAACAACCTTAACTTGTTATTTTTGGATGGTTGTACCGAACTCAAGAGTTTAAAGATTCATAGCAATATTCTATCAAGATCATCTGGATCAGTTGTTCTCCGTGATTGTCATAACCTTGAAACACTTTTAATCAGCGGTAGAATTGATCATGTGGTTCtatcacataattttttttatggatattCTAAGGTCGAAGAAATGGAAGCAGAAATAAAGTTGAATCATGAAGGGAATTATGAGATTGGGGAATCGTTTTTAGATACTGTTCCAAGTATCAATGATACTTGTTTGTTAGACATTTCAAAATGTAAGTCCCTAACATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAGAATTTTCTCTTCGTGGTTGTTTAAAGTTGGAGGAGTTACCTGAAATCAAGGAGACTATGGAAAATCTAAAAGTGCTCAACTTAGACAAAACAGCAATAAAAGAACTACCTTCATCCTTGCTCCATTTGGTCGGGCTTCAAGAACTGAGCTTGCAAAGTTGCACAAAGCTTAAGACTATTCCATCTTCTATTGGAAACCTCAGTAAACTCCTCAAGTTAAACCTTGCCTATTGTGCATCACTTGAAACTTTTCCAAACAGCATTTTCAAATTGAAGTTGACAGAACTCAATTTCGAAGGTTGCTCAATGCTTCAGACCTTTCCAGAGATCTTGGAGTCTGCAGAAAGTTTTGCTCACATTAACTTAACAAAAACCGCAATAAAAGAACTACCTTCATCCTTGCACCTTTTGGTTGGGCTTGAAATATTGAGCCTGCAAAGTTGCAGAAATCTTAAAACTATTCCATCTTCCATTGGAAATCTCACCAAACCCTTCAAGTTAGACCTTACCTATTGTGAGTCACTTGAAACTTTTCCGAGCAGCATTTTCAAATTGATGGTGAAAAGACTCGATTTTGAGGGTTGCTCAATGCTTAGGACCTTTCCAGAAATACCAAATGACATTGGCTGCTTGTCATCCTTGACTGAACTTTCACTGCAAGGAAGCAGTATTGTGAACCTTCCTGAGAGTTTGGCTCATCTATCAAGTTTGAAATCACTTAATTTAAGTGATTGCAAATTGCTTGAATGTGTTCCAATGCTTCCACCTAATCTAAACCAAGTTTTGGCATTTGATTGTCCTTCCATTAAGAGAATGGTGCTAAATTCATGTTCTGATCCTGGAGAAGGTACCTTCAAATTTCATCTCACCAACAGTCAAGAACTAGATGCAACATCTTTGAGTAATATTGTAGAGGAAGCATGCATTAAGATCAATGATGATGCATATTGTGCTATTGCTAAGTCCGATATAAAGTATGATGTGTTCCTGAGCTTTAGAGGAGAGGATACTCGTGACAACCTCACGAGTCATCTTTATGCAGAATTGTGTAGGAAAAACATTGCAACATTCATAGATTATAAACTTGACAGAGGCGAAGAGATTTCACCACCAGCACTGTACAAAGCAATAGAAGAATCAAAGATTTATGTGATCGTTTTGTCGGAACACTATGCTTCTTCAAGTTGGTGCTTAGATGAACTGACAGAGATACTGAAATGTAAGGAGAGATATGGAAGGGAAGTCATACCTGTGTTCTATAAGGTGGATCCATCAAATGTTAGGCATCAGAGACACAGTTATGCAGACGATTTTGTTAAGCATCATCAACGATTTGGTGGCAAAGTGGACGCGTGGAAGGCTTTTCTCTAA 3207 0.3795 MSDPKYDVFLSFRGEDTRGNFTSHLYAELCRKKIETFIDNRLGRGEEISPALYKAIEESKIYVIILSEHYASSSWCLDELTEILKCKDIYGREVIPVFYKVDPSNVRHHQRFGDKVDAWKASLTQVAGLSGWDSEKTRPESTLVTEIVEDILKKLSSCFLSDYEGKPGIDMHIEQIQSLLLLELPNVRITGIWGMGGIGKTTIASAVFEKLTTQFSYKIIILNVQQEIERVGLDHVKSKYLSQLLGEDIKSSENNFSFDPRLKRTTVLLVFDDVKDADQLKDLIGTHSNFGQGSRIIVTSRNQQVLQNANADNIYQGKGTDAIQCIFLNMKEIKKVQLHADTFKKMHNLRMIKFYNYFGNGSNVTFHAFLKSFPNDLKFLHWEYFPQRSLPKDFCPENLATLNMSYSDLEQLWEGIRRYAPARVCSGRGVQVLLLSGDRVRRSLALPNLKRLNLRYSKKLIAVPDLSFCPKIEEVILSGCVSLTQVNSSSFLNNLNLLFLDGCTELKSLKIHSNILSRSSGSVVLRDCHNLETLLISGRIDHVVLSHNFFYGYSKVEEMEAEIKLNHEGNYEIGESFLDTVPSINDTCLLDISKCKSLTCLPAELLNLKFLTEFSLRGCLKLEELPEIKETMENLKVLNLDKTAIKELPSSLLHLVGLQELSLQSCTKLKTIPSSIGNLSKLLKLNLAYCASLETFPNSIFKLKLTELNFEGCSMLQTFPEILESAESFAHINLTKTAIKELPSSLHLLVGLEILSLQSCRNLKTIPSSIGNLTKPFKLDLTYCESLETFPSSIFKLMVKRLDFEGCSMLRTFPEIPNDIGCLSSLTELSLQGSSIVNLPESLAHLSSLKSLNLSDCKLLECVPMLPPNLNQVLAFDCPSIKRMVLNSCSDPGEGTFKFHLTNSQELDATSLSNIVEEACIKINDDAYCAIAKSDIKYDVFLSFRGEDTRDNLTSHLYAELCRKNIATFIDYKLDRGEEISPPALYKAIEESKIYVIVLSEHYASSSWCLDELTEILKCKERYGREVIPVFYKVDPSNVRHQRHSYADDFVKHHQRFGGKVDAWKAFL 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00804 1068 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 587 673 - -
Tsu02g00804 1068 ProSiteProfiles TIR domain profile. 4 155 IPR000157 GO:0007165
Tsu02g00804 1068 SUPERFAMILY Toll/Interleukin receptor TIR domain 934 1055 IPR035897 -
Tsu02g00804 1068 SMART till_3 5 129 IPR000157 GO:0007165
Tsu02g00804 1068 SMART till_3 937 1068 IPR000157 GO:0007165
Tsu02g00804 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 318 422 IPR044974 GO:0006952
Tsu02g00804 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 930 1060 IPR044974 GO:0006952
Tsu02g00804 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 451 535 IPR044974 GO:0006952
Tsu02g00804 1068 Gene3D - 2 160 IPR035897 -
Tsu02g00804 1068 Gene3D - 932 1068 IPR035897 -
Tsu02g00804 1068 Pfam NB-ARC domain 171 311 IPR002182 GO:0043531
Tsu02g00804 1068 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 315 - -
Tsu02g00804 1068 Gene3D Ribonuclease Inhibitor 310 572 IPR032675 -
Tsu02g00804 1068 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 658 848 - -
Tsu02g00804 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 587 673 IPR044974 GO:0006952
Tsu02g00804 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 337 IPR027417 -
Tsu02g00804 1068 Gene3D - 162 309 IPR027417 -
Tsu02g00804 1068 Gene3D Ribonuclease Inhibitor 728 926 IPR032675 -
Tsu02g00804 1068 Gene3D Ribonuclease Inhibitor 573 727 IPR032675 -
Tsu02g00804 1068 SUPERFAMILY L domain-like 325 625 - -
Tsu02g00804 1068 Pfam TIR domain 5 159 IPR000157 GO:0007165
Tsu02g00804 1068 Pfam TIR domain 937 1066 IPR000157 GO:0007165
Tsu02g00804 1068 ProSiteProfiles TIR domain profile. 936 1068 IPR000157 GO:0007165
Tsu02g00804 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 315 IPR044974 GO:0006952
Tsu02g00804 1068 SMART LRR_typ_2 823 845 IPR003591 -
Tsu02g00804 1068 SMART LRR_typ_2 632 655 IPR003591 -
Tsu02g00804 1068 SMART LRR_typ_2 679 703 IPR003591 -
Tsu02g00804 1068 SMART LRR_typ_2 749 773 IPR003591 -
Tsu02g00804 1068 SMART LRR_typ_2 846 873 IPR003591 -
Tsu02g00804 1068 PRINTS Disease resistance protein signature 844 860 - -
Tsu02g00804 1068 PRINTS Disease resistance protein signature 261 275 - -
Tsu02g00804 1068 PRINTS Disease resistance protein signature 189 204 - -
Tsu02g00804 1068 Pfam Leucine Rich Repeat 398 416 IPR011713 -
Tsu02g00804 1068 SUPERFAMILY L domain-like 544 893 - -
Tsu02g00804 1068 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 318 422 - -
Tsu02g00804 1068 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 930 1060 - -
Tsu02g00804 1068 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 451 535 - -
Tsu02g00804 1068 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 132 IPR035897 -
Tsu02g00804 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 658 848 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00804 Tsu-Chr2 6771436 6779471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00804 620 864 WRKY Transcription Factor Family AT4G12020 32.061 7.53e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00804 - - lja:Lj4g3v3113360.1 537.724