Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00780 ATGGCAAAGGGTTGCACCACCAACAACTATGAAGAGGCTAGGAAACAAAGACTTGAAGAAAACAAGAAGAGGTTTGAGGATTTAGGGATTTCAAAGATTTCAAAAATTTTGACTAAAGTCACGAGTCCTGCGAAGAAGTCCCagAATCATCTTCCCAAACGAAAATTAAAGACTAGTGATGATGTGGAACCTAGGCGCTCTTCTCGTCCAAGAAACCAAGTTACATCATACATCGAAGAGTTTAGCACAGACCTTCCAGATAGGAGATCATATATGCGGAAGAGGTCAAGGTCAAATTCATCATGTACAAGCTACATTGCAAGGCCTCTAGATGAAATCAAAGAAGCTACAGACCAAGAAAGAGATCGTGCTCTCGATGCTGCAGAGGCACTCCAAGTCAATTTGCAGTCTTCGAAGCCATCATTTATCAAGTCAATGGTCCGGTCTCATGTTTATAGTTGTTTTTGGTTGGGTCTTCCTAGTAGATTTTGTGTGGAACACCTTCCAAAATCGGCGTATAACATTAACATGACTTTAGAGGATGAAGATGGCTCAGAGTATGATGCTGTTTACATTGGTAGTAGAAGTGGGCTAAGTGGTGGCTGGAGAGCATTTGCATTGGAACATAAATTGGATGATGGTGATGCACTTGTTTTTGAATTGGTTGAACCAACAAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATAtagatgaagaggaagaagaaaacgATACTCTGGTGCAAGAAAATATGCACACATCCAAAGTAACAAAAGTATCCAAGACTTCCTCTAATCGTGGATCAAAATCAAAGAAGactaaaaagcaaaaacttGTCATTGAAACGAAGGAATCGGAGAGTTCTGAAGAGAGCATGCCAGAATTCAAACCACAGAGGGTAAATCTGAGTAGGAAAACTAGATCTTCTTGGGAAGAAGTGCAAAAGAAGCCTAAATTGCCTACCACTCCCGACTCTGAGTCAAATGAGGAAGCAAACACACCGAAGAAAAGTAATTCTCCTCAGAAGAAAATGCAGAAGACATCTGAAGCACCTACTACTCCCGAGCCAAAAGAGGAAGCACAAATTGAAATTGTGAAACCGAAAACTAGATCACagaaaaaaatgcaaaagaTATCTGAAGTATCTACTGCTCTTGAGTCGAAAGAGGAACCACTAGTTGAAACTGCGAAACCAAAGGCAGCTGCAAAGTTATCAAACAAGAAACAAAAGTCGAAAGAAGGTAATGAATGTGAAATTGATCCGTCAATCAATATTGAGCAGCTTCTTCCTAAAGACAATGTTGAAACTGTCGATGCTAACATGAGTAAGAAGAAAGAACATGTTCAAGACAATGATCTTGAGTCAACAAAAGATAAGCCAGATGAAAAACCAAATAAACGAGCCTCACAGATGTTTCGAAAAAAAGCAGCTCCTAAGTTTTTCAGAAAGAGAGCATAA 1464 0.3791 MAKGCTTNNYEEARKQRLEENKKRFEDLGISKISKILTKVTSPAKKSQNHLPKRKLKTSDDVEPRRSSRPRNQVTSYIEEFSTDLPDRRSYMRKRSRSNSSCTSYIARPLDEIKEATDQERDRALDAAEALQVNLQSSKPSFIKSMVRSHVYSCFWLGLPSRFCVEHLPKSAYNINMTLEDEDGSEYDAVYIGSRSGLSGGWRAFALEHKLDDGDALVFELVEPTRFKIYIVRAFPNIDEEEEENDTLVQENMHTSKVTKVSKTSSNRGSKSKKTKKQKLVIETKESESSEESMPEFKPQRVNLSRKTRSSWEEVQKKPKLPTTPDSESNEEANTPKKSNSPQKKMQKTSEAPTTPEPKEEAQIEIVKPKTRSQKKMQKISEVSTALESKEEPLVETAKPKAAAKLSNKKQKSKEGNECEIDPSINIEQLLPKDNVETVDANMSKKKEHVQDNDLESTKDKPDEKPNKRASQMFRKKAAPKFFRKRA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00780 487 CDD B3_DNA 140 233 IPR003340 GO:0003677
Tsu02g00780 487 SUPERFAMILY DNA-binding pseudobarrel domain 135 233 IPR015300 -
Tsu02g00780 487 MobiDBLite consensus disorder prediction 251 266 - -
Tsu02g00780 487 MobiDBLite consensus disorder prediction 472 487 - -
Tsu02g00780 487 MobiDBLite consensus disorder prediction 361 377 - -
Tsu02g00780 487 MobiDBLite consensus disorder prediction 39 74 - -
Tsu02g00780 487 Coils Coil 114 134 - -
Tsu02g00780 487 MobiDBLite consensus disorder prediction 242 487 - -
Tsu02g00780 487 MobiDBLite consensus disorder prediction 439 471 - -
Tsu02g00780 487 Pfam B3 DNA binding domain 142 232 IPR003340 GO:0003677
Tsu02g00780 487 Coils Coil 8 28 - -
Tsu02g00780 487 MobiDBLite consensus disorder prediction 53 68 - -
Tsu02g00780 487 SMART B3_2 142 235 IPR003340 GO:0003677
Tsu02g00780 487 MobiDBLite consensus disorder prediction 276 295 - -
Tsu02g00780 487 Gene3D - 116 235 IPR015300 -
Tsu02g00780 487 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 3 246 IPR044837 -
Tsu02g00780 487 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 3 246 - -
Tsu02g00780 487 MobiDBLite consensus disorder prediction 326 353 - -
Tsu02g00780 487 ProSiteProfiles B3 DNA-binding domain profile. 142 235 IPR003340 GO:0003677
Tsu02g00780 487 MobiDBLite consensus disorder prediction 307 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00780 Tsu-Chr2 6520734 6526174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00780 10 234 B3 DNA Binding Superfamily AT5G58280 50.593 1.47e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu02g00780 B3 1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00780 - - cam:101498339 493.812