Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00775 ATGGCTACCACACTATCTTGGAGGCATTCTGCCAACAATGGCAGCAGTCATGCTTCCACTGATCTGGAAAGGAATGGTGATGGGAAAGCTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTATGAAGATGGGATTGAGAGATCGTAGTAGCAGCATGGAGGATCCAGACGGGACATTAGCTAGTGTTGCTCAATGCATTGAGCAGCTGCGCCAGAGCTCATCTTCTGTGCATGAGAAAGAATATTCCTTAAGGCAGTTAATGGATCTTATAGATATGCGTGAAAATGCATTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTGCTCGTTTCCCTTCTCCGGTCAGGTTCGTTGAATGTGAAGATCCAGGCAGCAACTGTTTTGGGCTCACTTTGCAAAGAAAATGAACTGAGAGTAAAAGTTTTGCTTGGTGGATGTATTCCTCCATTGCTTGGTCTGCTAAAGTCAAGTTCTACTGAAGGTCAAATTGCAGCTGCAAAGACTATATATGCTGTCTCTCAAGGTGGGGTGAAAGATCATGTTGgttccaaaatattttcaacCGAAGGAGTAGTACCAGTGCTCTGGGAGCAGTTGCGAACTGGTCTGAAAGCCGGAAACGTAGTTGAAAGTTTACTGACGGGAACATTGAAAAATCTCTCCAGCAATGCTGAGGGATTCTGGAATGCAACAATTCAAGCTGGAGGAGTGGACATATTAGTGAAGTTATTGGCAACAGGGCAACCTAGCACTTTAGCCAATGTTTGCTTTTTGCTTGCTGCTGTAATGATGGAGGATGCATCCGTTTGTTCAAAGGTGTTGAATGCAGAGGTGACTAAACAACTATTGAAACTATTAGGCCCTGGTAATGATGACCTCGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCTCAATGCAAAGAGGCGAGGCGGGAAATAGCCAGTTCTAATGGCATTCCTGCTTTGATCAATGCTACTATAGCTCCTTCTAAAGAGTACATGCAAGGCGAGTGTGCTCAAGCATTACAAGAGAATGCTATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTCGGTCAAAGCCTTGAATCATGCTCTTCCTCTACCCAAATTGCCGACACTTTAGGAGCTATAGCATCAGCTCTTATGATATATGATAACAAGGCAGAATCTACCAAACCATCAGATCCTTCGGTGGTTGAACAGACATTACTGAAACAATTCAAACCTCGCTTGCCCTTCCTTGTGCAAGAACGGACCATTGAAGCTCTAGCTAGTTTGTACGGCAATCCCATACTCTCGGCTAAACTAGCAAATTCTGATGCAAAACATTTGCTTGTTGGTTTGATAACAATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACACTATGCAAAAGTGAAGGCAGTCTATGGCGCGCACTTCAGGGTCGTGATGGAGTTCAGCTATTGATATCTCTTCTTGGTCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCCTTACTTTGCCTTTTATCAAATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAAACAGGATCTGCAAAAGCAAAGGAAGATTCAGCAAGAATCCTTAAGAACTTGTGCAATCATAGTGAAGATATACGTGCTTGTGTTGAAAGTGCAGATGCTGTTCCTGCGTTGTTGTGGCTATTGAAGAATGGAAGTCCTAATGGGAAGGATATTGCAGCAAAGACCATAAATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACAAGTGACCTTCCTGATTCTAAGGTATATGTTTTGGATGCTTTGAGAAGTATGCTTTGTGTTGCTCCACTTAGTGACATTTTACGTGAAGGTAGTGCTGCTGGTGATGCATTTGATACTATGATAATGTTATTGAGCTCTACCAAGGAAGAAACTCAGGCAAAATCTGCGTCAGCTCTGGCCGAAATTTTTGAAGCAAGGAAAGATTTGCGTGAAAGTAGCATTGCCATCAAAGCTCTTTGTTCAGCCATGAAATTGCTTAATGTTGAATCCGAAAGTATCCTAATGGAGTCCTCAAACTGCCTGGCTTCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCAGCTGTTGCCAGAGATACATTATCGCCGCTAATTGCACTAGCTAACTCTTCGATTTTGGAAGTGGCAGAAATGGCTATAGGTGCTGTAGCAAATCTTATTTTGGATATTGACATAGCAAAGAAAGTTTCCGCCGAAGAAGTTATCTTGCCAGCTACTAGAGTATTGAACGAAGGCACAATTTCTGGAAAAACTCATGCTGCAGCAGCAATTGCTCGCCTTTTACATTCTCATAAAGTTGATAATGCTGTTATTGATTGTGTGGATCGTGCCGGAACTGTTCTTGCATTAGTTTCTTTTTTGGATTCTTCTGTCAATGGATCTATTGACACATCAGAGGCTTTAGAAGCACTTGTCATTCTGTCCAGGTCAGAAGAGACCGGTGCAAATATCAAACCAGCATGTGCAGTTTTGGCTGAATTCCCTAAAAGCTTAATCCCAATAGTCCTGTGCATTGCTAATTCGACACCGACATTGCAAGATAAAACAATCGAGATTTTATCTCGATTATGTAAAGATCAGCCTGTTGTTTTAGGGGATAGTGTTGTTTCTGCCTCTGGATGTATATCTTCAATAGCTAAAAGGATAATTAGTTCCACAAATGTGAAGGTCAAAATTGGTGGTGTTGCGCTCCTTATTTGTGCTGCAAAAGCAAATCATCAGAGACTGGTGGAGGATCTCAATATATCAAACTTGTCTGTTAACCTTATTCAGTCTCTAGTTGATATTCTTATTTCTGCACAGTCTTCTTTGGGTAATCAGGGGGATGATGATGACAAGGAGTCCATCAGCATATGCAGGCATGCAAAAGAAGAGGTCGACGGCCGTGAATCCAAAACTAGAACTTCCATTATATGCGGTGTTGACTTAGCTATATGGTTACTGTCTATTCTTGCTTGTCATgacgaaaaaaataaaactgcaATAATGAAGGCTGGAGCAATTGATGCCGTCACCGACAGGATCTCAAATTGTTACTCACAATATTCTCAGATTGACTACAAAGAAGATAACAGCACGTGGATCTGTGCCTTGTTGTTGGCAATATTATTTCAAGATAGAGATATCATACGGGTACATGCAACCACAAAGTCTGTACCAGCACTTGCCAATTTATTGAAGTCAGACGAAACCGAGAACAAATATTTTGCTGCACAATCAATAGCCAGCCTTGTTTGTAACGGTAGCAGGGGAACGCTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTCGGCTGTGCTGATACCGATATACAAGATCTTCTCGAAATGTCCGAGGAGTTTTCTTTAGTGCGTTATCCTGATCAAGTGGCTCTAGAAAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTTCTCAAACCAATTCCGGATCGCCCAGGTGCACCGTTTTTAGCTCTCGGGCTTTTGACTCAGCTTGGTAGAGATTGTCCGTCAAATAAGACTATAATGGTAGAATCTGGGGCTTTAGAGGCTCTTACGAAGTATCTTTCCCTTGGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGTTGTGCTGATATACGAAAACACGACTCTGCATTTGGCGCTGTTAATCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGGTGCAAGGTATAGCGCTTCAAAAGCTTTGGAAAGTTTATTCTCTGCAGACCATATTAGAAACGCTGAGATTGCTCGACAAGCTGTTCAACCCTTGGTAGAAATTCTTAATACTGGTTCAGAAAGGGAGCAGCATGCTGCAATTGCTGCATTGGTTGGGTTACTTAGCGAAAATCCATCAAGAGCACTTGCTGTTGCGGATGTTGAGATGAATGCAGTGGATGTTCTTTATAAGATCCTTTCGTCAAATTGTTCAACGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGCTCTATTTGGAAATACAAGGATTCGGTCCACGATGGCTGCTGCACGATGCATTGAACCACTAGTCTCTCTCCTTGCAACCGAGTTTAGTTCTGCTCATCATTCAGTTGTTCGGGCATTGGATAGGCTTGTCGACGACGAGCAACTGGCTGAATTAGTTGCTGCAAATGGTGCAGTTGTTCCTCTTGTTAGTCTGCTGTCTAGTAGAAACTATGTACTTCACGAGGCCATTTCCGGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAATGGAAATGGTAAAAGCTGGAGTCATTGAAAGAATACTGGACATCTTACACGAAGCACCTGATTTTTTGTGCGCAGCTTTTGCAGAACTGTTGCGTATATTAACCAATAATGCTACCATAGCTAAAGGACCATCAGCCGCTAAAGTTGTTGAACccttgtttttgttgttgacaaGATATGATTTTGCGCCTGACGGACAGCACAGTGCAATGCAGGTTCTGGTTAATATCTTAGAGCACCCAAAGTGTCGTGCTGATTATTCATTAACTTCTCACAAAGTTATTGAACCACTTATCCCATTGCTTGATTCGCCGATATCAGTAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTGCTCCTAGAAGAACATCTTCAGAAGAATCCACTGACACCGAAAGTAATTGCCCCTCTTATAAGAATTCTCGGTTCTGGTATACCTTTATTGCAGCAGCGAGCTCTGAAGGCCCTAGTTAGTATTGCGCTAACATGGCCAAACGAAATTGCCAAAGAGGGTGGTGTTGTTGAGATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCTTTATGGGAATCTGCTGCATCTGTCCTGTCAAGTATTCTGCAATTTAGCTCAAAGTTCTACTTGGAAGTGCCTGTTGCTGTGTTGGTAAGGTTGCTTCGATCAGGCTCAGAGAGCACAGTTATTGGTGCGTTAAACACTCTTCTTGTTTTGGAAAGTGATGATGGAACTAGTGCAGAATCTATGGCTGAAAGTGGTGCAATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAGGAAGTTGCTGCACGACTCTTAGAAGTATTGCTGAACAACGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCGTTATCACAATATCTATTGGACCCACAAACCCAAGCACAGCACGCAAGGTTATTGGCAACTTTGGCTCTTGGGGATCTTTTCCAGAATGAGGCTCTTACTCGAACAGCTGATGCAGTTTCTGCGTGCCGTGCTTTAGTGAACGTGCTTGAAGATCAACCGACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAATCTTGTGATGTACAGTCGACCAAATAGAAGAGCAGTTGCAGAGGCCGGTGGTGTTCAAGTTGTACTGGATCTGATAGGTTCAAGTAATCCTGAAGCTTCTGTACAGGCTGCAATGTTTATTAAACTTCTGTTCTCAAATAATACAATTCAAGAGTATGCTTCTATTGAAACAGTCAGAGCAATTACTGCCACTATTGAAAAAGATTTATGGGCAAGTGGAACTGTGAACGAGGAATATCTGAAAGCATTAAATTCTCTATTAAGCAACTTCCCACGACTGAGAGCAACCGAACCTGCGACACTTAGTATTCCCCATCTGGTAACATCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCTGCCTTGGATGCACTTTTTCTGCTCAGACAAGCTTGGTCAGCATGCCCTGCTGAAGTTTCAAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCTTTCCTGCAGTACTTAATCCAGTCTGGTCCGCCTCGGTTTCAGGAGAAGGCGGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATTGTCAAGCGTGGTAACAATATGAGACAGTCTGTTGGAAACCCTAGTGTGTACTGCAAGATTACTCTTGGCAATAATCCACCAAGGCTAACCAAGGTGGTCTCAACTGGTCCCAATCCGGAGTGGGAAGAGAGCTTTACATGGTCCTTTGAGAGTCCACCAAAAGGCCAGAAACTACATATTTCTTGcaaaaacaaaagcaaagtGGGAAAGAGTAAATTTGGGAAAGTAACAATCCAAATTGATCGAGTGGTAATGCTCGGAGCCGTAGCTGGTGAGTACACTCTATTGCCTGCAAGTAAAAGTGGACCACCAAGGAATCTAGAAATTGAATTTCAGTGGTCTAACAAAGCAAGTGATACAACAACTGATACAGTTCAGCAGTAG 6492 0.4233 MATTLSWRHSANNGSSHASTDLERNGDGKAQDSEPPTPHSVMKMGLRDRSSSMEDPDGTLASVAQCIEQLRQSSSSVHEKEYSLRQLMDLIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLRTGLKAGNVVESLLTGTLKNLSSNAEGFWNATIQAGGVDILVKLLATGQPSTLANVCFLLAAVMMEDASVCSKVLNAEVTKQLLKLLGPGNDDLVRAEAAGALKSLSAQCKEARREIASSNGIPALINATIAPSKEYMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCSSSTQIADTLGAIASALMIYDNKAESTKPSDPSVVEQTLLKQFKPRLPFLVQERTIEALASLYGNPILSAKLANSDAKHLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGRDGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLCVAPLSDILREGSAAGDAFDTMIMLLSSTKEETQAKSASALAEIFEARKDLRESSIAIKALCSAMKLLNVESESILMESSNCLASIFLSIKENKDVAAVARDTLSPLIALANSSILEVAEMAIGAVANLILDIDIAKKVSAEEVILPATRVLNEGTISGKTHAAAAIARLLHSHKVDNAVIDCVDRAGTVLALVSFLDSSVNGSIDTSEALEALVILSRSEETGANIKPACAVLAEFPKSLIPIVLCIANSTPTLQDKTIEILSRLCKDQPVVLGDSVVSASGCISSIAKRIISSTNVKVKIGGVALLICAAKANHQRLVEDLNISNLSVNLIQSLVDILISAQSSLGNQGDDDDKESISICRHAKEEVDGRESKTRTSIICGVDLAIWLLSILACHDEKNKTAIMKAGAIDAVTDRISNCYSQYSQIDYKEDNSTWICALLLAILFQDRDIIRVHATTKSVPALANLLKSDETENKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLEMSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGRDCPSNKTIMVESGALEALTKYLSLGPQDATEEAATDLLGILFSCADIRKHDSAFGAVNQLVAVLRLGGRGARYSASKALESLFSADHIRNAEIARQAVQPLVEILNTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVDVLYKILSSNCSTDLKGDAAELCCALFGNTRIRSTMAAARCIEPLVSLLATEFSSAHHSVVRALDRLVDDEQLAELVAANGAVVPLVSLLSSRNYVLHEAISGALVKLGKDRPACKMEMVKAGVIERILDILHEAPDFLCAAFAELLRILTNNATIAKGPSAAKVVEPLFLLLTRYDFAPDGQHSAMQVLVNILEHPKCRADYSLTSHKVIEPLIPLLDSPISVVQQLAAELLSHLLLEEHLQKNPLTPKVIAPLIRILGSGIPLLQQRALKALVSIALTWPNEIAKEGGVVEISKVILQADPSLPHALWESAASVLSSILQFSSKFYLEVPVAVLVRLLRSGSESTVIGALNTLLVLESDDGTSAESMAESGAIEALLELLRSHQCEEVAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQHARLLATLALGDLFQNEALTRTADAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRPNRRAVAEAGGVQVVLDLIGSSNPEASVQAAMFIKLLFSNNTIQEYASIETVRAITATIEKDLWASGTVNEEYLKALNSLLSNFPRLRATEPATLSIPHLVTSLKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPFLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIVKRGNNMRQSVGNPSVYCKITLGNNPPRLTKVVSTGPNPEWEESFTWSFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGAVAGEYTLLPASKSGPPRNLEIEFQWSNKASDTTTDTVQQ 2163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00775 2163 ProSiteProfiles C2 domain profile. 2012 2129 IPR000008 -
Tsu02g00775 2163 SMART arm_5 136 176 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1858 1898 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1815 1856 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 482 523 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 733 771 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 567 607 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1482 1522 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1440 1480 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 94 135 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1399 1439 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 268 309 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1230 1271 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1731 1770 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1568 1608 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 525 565 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1313 1353 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 1185 1228 IPR000225 GO:0005515
Tsu02g00775 2163 SMART arm_5 311 360 IPR000225 GO:0005515
Tsu02g00775 2163 MobiDBLite consensus disorder prediction 1 57 - -
Tsu02g00775 2163 SUPERFAMILY ARM repeat 1187 1569 IPR016024 -
Tsu02g00775 2163 CDD C2 2033 2123 - -
Tsu02g00775 2163 SUPERFAMILY ARM repeat 1622 2029 IPR016024 -
Tsu02g00775 2163 Gene3D - 654 877 IPR011989 -
Tsu02g00775 2163 SUPERFAMILY ARM repeat 426 771 IPR016024 -
Tsu02g00775 2163 Coils Coil 297 317 - -
Tsu02g00775 2163 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1197 1241 IPR000225 GO:0005515
Tsu02g00775 2163 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g00775 2163 Pfam C2 domain 2031 2122 IPR000008 -
Tsu02g00775 2163 Gene3D - 1615 2030 IPR011989 -
Tsu02g00775 2163 Gene3D - 1014 1366 IPR011989 -
Tsu02g00775 2163 SUPERFAMILY ARM repeat 1026 1160 IPR016024 -
Tsu02g00775 2163 SUPERFAMILY ARM repeat 75 393 IPR016024 -
Tsu02g00775 2163 Gene3D - 1367 1614 IPR011989 -
Tsu02g00775 2163 Gene3D - 49 406 IPR011989 -
Tsu02g00775 2163 Gene3D - 407 653 IPR011989 -
Tsu02g00775 2163 SMART C2_3c 2032 2128 IPR000008 -
Tsu02g00775 2163 SUPERFAMILY ARM repeat 661 1064 IPR016024 -
Tsu02g00775 2163 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2152 - -
Tsu02g00775 2163 Gene3D C2 domain 2031 2161 IPR035892 -
Tsu02g00775 2163 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2152 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Tsu02g00775 2163 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Tsu02g00775 2163 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Tsu02g00775 2163 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2031 2138 IPR035892 -
Tsu02g00775 2163 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00775 Tsu-Chr2 6490883 6501516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00775 448 605 U-box Gene Family AT3G46510 30.303 9.72e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00775 - - mtr:MTR_8g091470 3836.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00775 02 6490883 6501516 Tsu02g00775 02 6490883 6501516 ECH
Tsu02g00775 02 6490883 6501516 Tsu07g02305 07 26091342 26101216 PCT