Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00756 ATGGCAGGTAATAAGAGAAACCAAACAAGTCCTGTAGGAAGTCCAACATCAGGAAACATATCAGACAGTTCATCCTCGAAAGAACAAGACAGGTTCCTACCAATTGCTAACGTGAGCCGTATAATGAAAAGAGCACTACCAGCAAATGCTAAAATCTCAAAAGAAGCTAAAGAAACTGTTCAAGAATGTGTTTCTGAGTTCATAAGTTTCATTACCGGTGAAGCTTCTGATAAGTgtcaaagagaaaaaagaaaaacaattaatgGTGATGATCTTCTTTGGGCTATGACAACACTTGGTTTTGAAAATTATGTTAGTCCTTTGAAAGTTTATCTTAATAATTATAGAGAAACTGAAGGAGAAAAAAGTAATTCTTCTTCTATGGTTACTAGTACTAAACAAGATGATTATGATCTTAATAATTCTTCAATTGATGTTAATCATGATGTTGTTGTTAGTGGTGGTGGATTTTATTCTCAAGTTATTGATCATGCTCCAAAGAGATTCCAAGAGATTAATGGAGGGATAGTGGATTATAATGGCCATCATGGTGATGAAACAGAACATGCAATTGGAAGTGGTAATAGAATCATGCCACCAAACCTACGTTATAGGGTTGAATGGTAG 627 0.3365 MAGNKRNQTSPVGSPTSGNISDSSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVSPLKVYLNNYRETEGEKSNSSSMVTSTKQDDYDLNNSSIDVNHDVVVSGGGFYSQVIDHAPKRFQEINGGIVDYNGHHGDETEHAIGSGNRIMPPNLRYRVEW 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00756 208 Gene3D Histone, subunit A 19 145 IPR009072 GO:0046982
Tsu02g00756 208 SUPERFAMILY Histone-fold 29 140 IPR009072 GO:0046982
Tsu02g00756 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu02g00756 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Tsu02g00756 208 MobiDBLite consensus disorder prediction 1 32 - -
Tsu02g00756 208 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Tsu02g00756 208 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Tsu02g00756 208 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Tsu02g00756 208 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu02g00756 208 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 12 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00756 Tsu-Chr2 6339649 6340334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00756 24 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.408 2.81e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu02g00756 CBFD_NFYB_HMF 1.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00756 K08065 - gmx:100810059 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00756 02 6339649 6340334 Tsu02g00756 02 6339649 6340334 ECH