Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00742 ATGGCAGTGATGGGGCTTTATGACTCTGCGTACTGGTTATCATGGCTAACCTGGGAAACAGTTGTTACACTCATATCATCTATTATCATAGTTCTCTCTGGCATGGTGTTTCAGTTTAGTTTCTTCTTGAAAAATAGCTTCGCTGTtctgtttgttttgttcttcCTATTTGAACTCAACATGACTGGGTTGGCCTTCATGTTATCGGCTTTCATTCGTAAATCAGCTTCTGCAACAACAATCGGCTTCTTCATATTTATTATCGGCTTTGTGACACAGCTTGTCGTACAAGCCGGATTTCCTTACTCAGCTAGCTTCTCTGATACTTACCGAAATTTATGGTCATTGTTTCCGCCTAATCCTTTTGCTCAAGCCCTGACTTTGCTTTCAAATGCTGTTTCAACCCCTGAAAATGATGGTATTAGCTGGAGTAAACGGGGATCATGCGTTGTTGACGACGATGACTGTGTGATGACAATTAATGATATTTATAAATGGCTTCTTGCCACATTCTTTTTGTGGTTTGTTCTGGCCATCTACTTTGACAATATAATCCCAAATGCAATGGGTGTGAGGAAATCTGTGTTATACTTTCTAAATCCTTATTATTGGACAGGAAAAGGAGGACAAAAAGTGAAagAGGGTGGGATTTGTAGTTGCTTAACTTCAGCCCATCACGAAGAAAATAGTGCAGCAAATGATGAAGATGTCCTTGAAGAAGAAAATGCTGTGAAACAGCAACTAAGACAAGGTGTGGTTGACGCAAATGTTGCTGTTCAGGTACATGGCATTATGAAGACTTATCCCGGTACATTCAGCATTGGTTGCTGCTGTAAATGTAAAAGAACTGCTCCTTACCATGCTCTTAAGGGCTTGTGGGTGAACTTTACAAAGGACCAGTTATTTTGTCTTTTAGGACCTAATGGAGCTGGAAAAACTACAATTATTAATTGTTTGACAGGGATAACTCCAGTAACTGATGGAGATGCATTGATTTATGGGCATTCAACACGAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCGAACTCTTCGCTAGTATTAAAGGCATCTCCCCAGCTTCTATAAAATCGATTACTCAGACATCATTGGCAGAGGTGAGACTCATGGATGCAGCTAAAGTAAGATCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTTAGTGTTGCAATTGCTCTTATTGGTGACCCAAAATTAGTCATTTTGGATGAACCgACTACTGGTATGGATCCGATAACAAGGAGGCATGTCTGGGACATAattgaaaatgcaaaaaaagGGCGTGCCATTATTCTCACAACACATTCTATGGAAGAAGCTGACATTCTAAGTGACCGAATAGGAATCATGGCAAAGGGAAGACTCCGCTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTCGGTACTGGTTTTATTGCTAATATTAGCTTCTATGGAAACAATAATGAACATAGTCCTGCAAATAGTGATGAAATATCAGCAAGACACCATGAGGCTGTGAAGCAATTCTTTAAGAATCGTTTAGATGTAGTACCAAAAGAGGAGAACAATAACTTTCTAACTTATGTGATTCCTCATAATAAAGAGGCGCTCCTTACAAATTTTTTTTCGGAGCTCCAAGATAGAGAAGAAGAGTTTGGCATATCTGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAGGCAAGCAGAGCTAGAAAGTGCTACAGCTGAAGGGAGCTTAGTGACTTTGACCTTGACATCTGGAGAGTTTGCGGAGATTCCGATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAATATCCCACTGGTTTTATGGTAGAAGTATACTGGGAACAAGATGACACCGGTGCTCTTTGTGTCGCTGGCCACTCACAGAAAGCTCCAATTCCTCAAAATATCCAACTACCATCATCTGCTACTACTGCAAGACAGCGCCGGTCAGGGTCAGTTCACGGGGTTGTGATTGATCCAAGTCAAGTTACTTCTGTCAATTTCCAGTGA 2118 0.4075 MAVMGLYDSAYWLSWLTWETVVTLISSIIIVLSGMVFQFSFFLKNSFAVLFVLFFLFELNMTGLAFMLSAFIRKSASATTIGFFIFIIGFVTQLVVQAGFPYSASFSDTYRNLWSLFPPNPFAQALTLLSNAVSTPENDGISWSKRGSCVVDDDDCVMTINDIYKWLLATFFLWFVLAIYFDNIIPNAMGVRKSVLYFLNPYYWTGKGGQKVKEGGICSCLTSAHHEENSAANDEDVLEEENAVKQQLRQGVVDANVAVQVHGIMKTYPGTFSIGCCCKCKRTAPYHALKGLWVNFTKDQLFCLLGPNGAGKTTIINCLTGITPVTDGDALIYGHSTRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLELFASIKGISPASIKSITQTSLAEVRLMDAAKVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNNEHSPANSDEISARHHEAVKQFFKNRLDVVPKEENNNFLTYVIPHNKEALLTNFFSELQDREEEFGISDIQLGLTTLEEVFLNIARQAELESATAEGSLVTLTLTSGEFAEIPIGARFVGIPGTESAEYPTGFMVEVYWEQDDTGALCVAGHSQKAPIPQNIQLPSSATTARQRRSGSVHGVVIDPSQVTSVNFQ 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00742 705 Pfam ABC-2 family transporter protein 1 180 - -
Tsu02g00742 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 259 505 IPR003439 GO:0005524
Tsu02g00742 705 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 1 676 - -
Tsu02g00742 705 Gene3D - 246 531 IPR027417 -
Tsu02g00742 705 ProSitePatterns ABC transporters family signature. 407 421 IPR017871 GO:0005524
Tsu02g00742 705 Pfam ABC transporter 290 434 IPR003439 GO:0005524
Tsu02g00742 705 CDD ABC_subfamily_A 259 493 - -
Tsu02g00742 705 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1 676 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tsu02g00742 705 SMART AAA_5 298 482 IPR003593 -
Tsu02g00742 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 487 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00742 Tsu-Chr2 6261227 6268326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00742 303 528 Calmodulin-binding Proteins AT2G36910 23.932 4.18e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00742 - - ccaj:109790891 1162.9