Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00709 ATGCCAATGATGTTTCCTGGTTTTCATAGAGAAGGAGAAATGTCAGCTATGGTTTCTGCTTTAACACATGTGATATGTGGTGATCAGAACAATGATGATTTTAGTGTTCTGAATCACAGTGCATTTCATCAAGGTGATGGTATAGATATCAATCCTTTTGTTTCTGCAACAACATCTTCAACTTCTTTATCTTATGGTGATAGTTCTGCTCtcaagagaagaagagaagatggTGGATTCTTTCACAATTCTTCCTCTACTTTTCCCCCAAATAAACACCAAGAATGTTCAAGCAACTGGACAaacacaataacaacaacagAAAGGAGTCAAATATCAGAACCAATATATGAATACAGCACAGACAATAACAATGTGAAAAATGAAGAgcaaccaaaaagaaaatacagAGGAGTGAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCTACAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCTAAAGCCTATGATCAAGCTGCACTGCGTTTTAGAGGCAACAAAGCAAAACTTAATTTTCCTGAAAATGTTAGGATcaagcagcaacaacaacaacaacaacctttgGTTAATCCTATACAGAACCATTTGAGTATTACACATTCTGATAGCATTGATCCCATGGTTCAGGGTCGAAGTTTGCAAGGTTACGATAGTTCTAAAAAGTTTCACGGTCAAAACTTCCCTATGAGATCATATGATCAGATTACTATGTCATCATCTAATGACAGGGCTTCTCTTCAAACTTCAATGTCACCATCATCGGCTTCATATTCTTCTACTACTTCTACTACTATTGTTTCTTCTTTAAGTTCTCCGCAGACAACTTCATCGATTCCTTCGGTTTATACTACCGATTTTCCAGCATGGTCTTCTGGTTTTAACTCATCTCCCTCGGGCTAA 957 0.3417 MPMMFPGFHREGEMSAMVSALTHVICGDQNNDDFSVLNHSAFHQGDGIDINPFVSATTSSTSLSYGDSSALKRRREDGGFFHNSSSTFPPNKHQECSSNWTNTITTTERSQISEPIYEYSTDNNNVKNEEQPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAAKAYDQAALRFRGNKAKLNFPENVRIKQQQQQQQPLVNPIQNHLSITHSDSIDPMVQGRSLQGYDSSKKFHGQNFPMRSYDQITMSSSNDRASLQTSMSPSSASYSSTTSTTIVSSLSSPQTTSSIPSVYTTDFPAWSSGFNSSPSG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00709 318 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Tsu02g00709 318 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Tsu02g00709 318 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Tsu02g00709 318 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
Tsu02g00709 318 MobiDBLite consensus disorder prediction 221 318 - -
Tsu02g00709 318 Pfam AP2 domain 135 184 IPR001471 GO:0003700|GO:0006355
Tsu02g00709 318 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Tsu02g00709 318 PANTHER DNA-BINDING DOMAIN PROTEIN 22 314 - -
Tsu02g00709 318 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Tsu02g00709 318 Gene3D AP2/ERF domain 134 194 IPR036955 GO:0003700|GO:0006355
Tsu02g00709 318 PANTHER DNA-BINDING DOMAIN 22 314 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00709 Tsu-Chr2 5978554 5980252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00709 128 195 AP2-EREBP Transcription Factor Family AT5G13330 78.261 1.71e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g00709 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00709 - - mtr:MTR_8g092460 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00709 02 5978554 5980252 Tsu02g00709 02 5978554 5980252 ECH
Tsu02g00709 02 5978554 5980252 Tsu07g01378 07 12179747 12181382 ECH