Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00705 ATGTCAGTGCCGATGGCAATTGCTCTCTCCGGACAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCGGAAAAAAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACCGAGGCTAATCTCCGAGAgatttttgagCCATTTGGTCAGATTGAAGTTGTACAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTGCAATTTGCCCATCTCGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTAGAGATTGCTGGCAGGACCATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAATCTGcagattttgatgatgatgaaggtggATTGACTTTAAATGCCCACTCGAGGGCATTGCTTATGCAAAGGTTGGCTGGTGCTGACGTTCCCACAAGCATTGGTGTGAATGGGTCGGTTCCTGTTCAGCAGGCTTTTAGCTTTCCTATTGGTAATCCAGGTGTTATATCCGCACCAGGTCTACCAACACAAGTTATGCCTACTCCTGTGGTAGAACCAGTAGGAATCCCCAGCGAGTGTTTATtattgaagaatatgtttgatcCAAGCACCGAGGCGGAACCAGATTTCGATATTGACATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATACGGACGGGTGAAGCATATTCATGTTGACAAAAGAAGTGCAGGTTTTGTGTACTTGCAGTTTGAAACGGTGGAAGCATCAAGTGCTGCACAACGAGCAATGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCTATCTTCATGGAACCACATTTATATGAGGCCAAGTTTAAGGGGGAATTGTGA 939 0.4249 MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADVPTSIGVNGSVPVQQAFSFPIGNPGVISAPGLPTQVMPTPVVEPVGIPSECLLLKNMFDPSTEAEPDFDIDIKEDVEEECSKYGRVKHIHVDKRSAGFVYLQFETVEASSAAQRAMHMRWFARRLITAIFMEPHLYEAKFKGEL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00705 312 SMART rrm1_1 219 296 IPR000504 GO:0003723
Tsu02g00705 312 SMART rrm1_1 52 125 IPR000504 GO:0003723
Tsu02g00705 312 CDD RRM2_RBM23_RBM39 53 125 - -
Tsu02g00705 312 PANTHER CC1-LIKE SPLICING FACTOR 1 311 - -
Tsu02g00705 312 CDD RRM3_RBM39_like 217 299 - -
Tsu02g00705 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Tsu02g00705 312 Gene3D - 47 143 IPR012677 -
Tsu02g00705 312 SUPERFAMILY RNA-binding domain, RBD 213 299 IPR035979 GO:0003676
Tsu02g00705 312 Gene3D - 213 311 IPR012677 -
Tsu02g00705 312 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 311 - -
Tsu02g00705 312 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 144 236 IPR029123 -
Tsu02g00705 312 SUPERFAMILY RNA-binding domain, RBD 9 129 IPR035979 GO:0003676
Tsu02g00705 312 TIGRFAM SF-CC1: splicing factor, CC1-like family 1 308 IPR006509 GO:0003723|GO:0005634|GO:0006397
Tsu02g00705 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 294 IPR000504 GO:0003723
Tsu02g00705 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00705 Tsu-Chr2 5952058 5958508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00705 53 137 Eukaryotic Initiation Factors Gene Family AT3G16380 35.870 1.58e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00705 K13091 - gmx:100818613 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00705 02 5952058 5958508 Tsu07g01371 07 12095776 12104489 ECH
Tsu02g00705 02 5952058 5958508 Tsu02g00705 02 5952058 5958508 ECH
Tsu02g00705 02 5952058 5958508 Tsu07g01371 07 12095776 12104489 PCT