Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00693 ATGTATGCTTCTACTTCCTTTACTTCACAACTTGTCCATGAGCTTCTTGTTGAATCTCACACAAGAAGGTTACTCTTCCAAGGCCCAGTTGATCATCAATCACTAACCAATTCCCCTATTCTAACACAGACCCATAATTCAACCAATTCATATTTCGGGATTCGTGAATTTGATGCAAATGTTGTGATGATACTAGCAGTCCTATTGTGTGCTCTTATTTGCTCACTTGCGTTGAACTCTATCATAAGGTGTGCCTTAAGGTTTTCAAACGTAGCTGTCAACAACGACTCTTCTTCGAGTTCGAGTGCCAATTCTTCGCCTCAATTGATCAACAAAGGAATCAAGAAGAAAGCTCTGAAGACTTTTCCCACGGTGAGCTACTCAGCTGAGTTGAAACTGCCAAGTTTGGACACAGAGTGTATGATATGTCTCTCGGAATTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGCACACTCATCATGCCCCAAGTGCAGGCAGTGTCTCCTTGAGACTTGTCGAAAGATTGTTGAGTCGGAAGCACCACCTATGTTAGCAGTGCCAGAAACTATTATTAGGATCCAGCCACTAGTCGCTGAAGCTTTTGTACGTAACTATAGGGAAGCAAGCTGA 681 0.4258 MYASTSFTSQLVHELLVESHTRRLLFQGPVDHQSLTNSPILTQTHNSTNSYFGIREFDANVVMILAVLLCALICSLALNSIIRCALRFSNVAVNNDSSSSSSANSSPQLINKGIKKKALKTFPTVSYSAELKLPSLDTECMICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVESEAPPMLAVPETIIRIQPLVAEAFVRNYREAS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00693 226 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Tsu02g00693 226 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Tsu02g00693 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
Tsu02g00693 226 Pfam Ring finger domain 139 182 IPR001841 -
Tsu02g00693 226 SUPERFAMILY RING/U-box 118 187 - -
Tsu02g00693 226 SMART ring_2 140 181 IPR001841 -
Tsu02g00693 226 PANTHER RING-H2 FINGER PROTEIN ATL78 1 225 IPR044602 GO:0016567|GO:0016740
Tsu02g00693 226 CDD RING-H2_PA-TM-RING 139 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00693 Tsu-Chr2 5850827 5851507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00693 53 186 C3H Transcription Factor Family AT3G10910 52.518 3.78e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00693 K19040 - gmx:100780127 303.138