Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00692 ATGTATGCTTCTACTTCCTTTACTTCACAACTCGTTCATGAGCTTCTTGTGGAATCTAACACAAGAAGGTTACTCTTTCAAGACCCGGTTGATCATCGATCACTAACCAACTCCCCTGTTTTAACAAATGACCATAATTCAACAGACTCGTATTTTGGAATTCGCAGATTTGATGCAAATGCTGTGATGATACTAGGAGTCCTATTGTGTGCTCTTATTTGCTCACTTGCATTAAACTCCATCATAAGGTGTGGTTTAAGGTTTTTAAATGTAGCCATCAACAATGATTCTTCTTCGAGTTCGAGTAGCAACTCTTCGCCTCAATTGGCCAACAAAGGAATCAAGAAAAAAGCTCTCAAGACATTTCCCACAGTGAGCTACTCAACTGAGTTAAAACTACCAAGTTTGGATACAGAGTGTGTGATATGTCTCTCAGAATTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAATCATGGTTTCCATGTCCATTGCATCGACAAATGGCTAAAGGCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGGTCGGAAGCACCATCTATGTTGCCAGTGCCAGAAACTATTATTAGGATTCAACCACTGGACCATGAAGTTTTTGAATGTAACTATAGGGAAGAAAGCAGATAA 684 0.4064 MYASTSFTSQLVHELLVESNTRRLLFQDPVDHRSLTNSPVLTNDHNSTDSYFGIRRFDANAVMILGVLLCALICSLALNSIIRCGLRFLNVAINNDSSSSSSSNSSPQLANKGIKKKALKTFPTVSYSTELKLPSLDTECVICLSEFTKGEKVRILPKCNHGFHVHCIDKWLKAHSSCPKCRQCLLETCRKIVGSEAPSMLPVPETIIRIQPLDHEVFECNYREESR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00692 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
Tsu02g00692 227 PANTHER RING-H2 FINGER PROTEIN ATL78 1 225 IPR044602 GO:0016567|GO:0016740
Tsu02g00692 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Tsu02g00692 227 SUPERFAMILY RING/U-box 118 187 - -
Tsu02g00692 227 SMART ring_2 140 181 IPR001841 -
Tsu02g00692 227 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Tsu02g00692 227 Pfam Ring finger domain 139 182 IPR001841 -
Tsu02g00692 227 CDD RING-H2_PA-TM-RING 139 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00692 Tsu-Chr2 5847626 5848683 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00692 57 186 C3H Transcription Factor Family AT3G10910 52.985 2.46e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00692 K19040 - gmx:100780127 321.627