Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00691 atgTATGCTTCTACTTCCATTACTTTACCACTCTTCCAAGAGCTTCTTGTGGAATCTCACATAAGAAGGTTACTCTTCCAAGACCCAGTTGAACATCAATCACTTAAAATCAACTCCCCTGTTTCCACAAACAACCATAATTCAACAGACTCATATTTCGGAGCTGGTGAATTTGATTCAAAAGTTGTGATGATACTTGCAGTCATTTTATGTGCTTTTATTTGCTCACTAGCATTAAACTCGATCATAAGATGTGCCTTAAGGTTTACAAACGTAGCCATCAATGACAACTCTTCTTCGAGCAGCAACCTTTTACCTCAATTGATCAACAAAGGAATCAAGAAGAAAGCTCTCAAGAGATTCCCAACATTGAGCTATTCAAGTGAATTGAAACTACCAAATTTGGATACAGAGTGTATGATATGTCTCTCAGAGTTCACAAAGGATGAAAAAGTGCGCATTTTGCCTCAATGCAACCATGGTTTTCATGTTACTTGCGTTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGTAGACAGTGTCTTCGTGAAACTTGTCGAAAGACTGGTGGGTCGCAGGTGCAACCAATTTCGTTGCCAGTGCCAGAAACCATTATAAGGATCCAACCACTAGAGCATGAAGATTTAGAACGTAACTATAGGGAAACATAA 678 0.3894 MYASTSITLPLFQELLVESHIRRLLFQDPVEHQSLKINSPVSTNNHNSTDSYFGAGEFDSKVVMILAVILCAFICSLALNSIIRCALRFTNVAINDNSSSSSNLLPQLINKGIKKKALKRFPTLSYSSELKLPNLDTECMICLSEFTKDEKVRILPQCNHGFHVTCVDKWLKEHSSCPKCRQCLRETCRKTGGSQVQPISLPVPETIIRIQPLEHEDLERNYRET 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00691 225 Pfam Ring finger domain 138 181 IPR001841 -
Tsu02g00691 225 SMART ring_2 139 180 IPR001841 -
Tsu02g00691 225 CDD RING-H2_PA-TM-RING 138 181 - -
Tsu02g00691 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 224 - -
Tsu02g00691 225 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Tsu02g00691 225 PANTHER RING-H2 FINGER PROTEIN ATL78 1 224 IPR044602 GO:0016567|GO:0016740
Tsu02g00691 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Tsu02g00691 225 SUPERFAMILY RING/U-box 117 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00691 Tsu-Chr2 5842488 5844393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00691 36 184 C3H Transcription Factor Family AT3G10910 44.586 7.03e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00691 K19040 - gmx:100780127 294.664