Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g00691 | atgTATGCTTCTACTTCCATTACTTTACCACTCTTCCAAGAGCTTCTTGTGGAATCTCACATAAGAAGGTTACTCTTCCAAGACCCAGTTGAACATCAATCACTTAAAATCAACTCCCCTGTTTCCACAAACAACCATAATTCAACAGACTCATATTTCGGAGCTGGTGAATTTGATTCAAAAGTTGTGATGATACTTGCAGTCATTTTATGTGCTTTTATTTGCTCACTAGCATTAAACTCGATCATAAGATGTGCCTTAAGGTTTACAAACGTAGCCATCAATGACAACTCTTCTTCGAGCAGCAACCTTTTACCTCAATTGATCAACAAAGGAATCAAGAAGAAAGCTCTCAAGAGATTCCCAACATTGAGCTATTCAAGTGAATTGAAACTACCAAATTTGGATACAGAGTGTATGATATGTCTCTCAGAGTTCACAAAGGATGAAAAAGTGCGCATTTTGCCTCAATGCAACCATGGTTTTCATGTTACTTGCGTTGACAAATGGCTAAAGGAACACTCATCATGTCCCAAGTGTAGACAGTGTCTTCGTGAAACTTGTCGAAAGACTGGTGGGTCGCAGGTGCAACCAATTTCGTTGCCAGTGCCAGAAACCATTATAAGGATCCAACCACTAGAGCATGAAGATTTAGAACGTAACTATAGGGAAACATAA | 678 | 0.3894 | MYASTSITLPLFQELLVESHIRRLLFQDPVEHQSLKINSPVSTNNHNSTDSYFGAGEFDSKVVMILAVILCAFICSLALNSIIRCALRFTNVAINDNSSSSSNLLPQLINKGIKKKALKRFPTLSYSSELKLPNLDTECMICLSEFTKDEKVRILPQCNHGFHVTCVDKWLKEHSSCPKCRQCLRETCRKTGGSQVQPISLPVPETIIRIQPLEHEDLERNYRET | 225 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g00691 | 225 | Pfam | Ring finger domain | 138 | 181 | IPR001841 | - | |
Tsu02g00691 | 225 | SMART | ring_2 | 139 | 180 | IPR001841 | - | |
Tsu02g00691 | 225 | CDD | RING-H2_PA-TM-RING | 138 | 181 | - | - | |
Tsu02g00691 | 225 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 224 | - | - | |
Tsu02g00691 | 225 | ProSiteProfiles | Zinc finger RING-type profile. | 139 | 181 | IPR001841 | - | |
Tsu02g00691 | 225 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 1 | 224 | IPR044602 | GO:0016567|GO:0016740 | |
Tsu02g00691 | 225 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 186 | IPR013083 | - | |
Tsu02g00691 | 225 | SUPERFAMILY | RING/U-box | 117 | 186 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g00691 | Tsu-Chr2 | 5842488 | 5844393 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g00691 | 36 | 184 | C3H Transcription Factor Family | AT3G10910 | 44.586 | 7.03e-40 | 133 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g00691 | K19040 | - | gmx:100780127 | 294.664 |