Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00690 ATGTATGCTTCTACTTCCTTTACTTCACCACTCATCCATGAGCTTCTTGTGAAATCTCACACAAGAAGGTTACTCTTCCAAAATACAAATGAACATCAATCACTCAAAATCAACTCCCGTGTTTTCACAAACAACGGCAATTCAACCGACTCAAATTTTGATGCTCGTGAATTTGATTCAAATGTTGTGATGATAATTGCAAGCTTACTATGTTGTTTTATCTGCTTGCTTGCGTTAAACTCCATCATAAGGTGTGCCTTATTAAGGTTTTCAAATGTATCCATCAACAATGACTCTTTTTCGAGTTCGAGTAGCAACCCTTCACCTCAATTGGTCAATAAAGGAATCAAGAAGAAAATTCTCAAGAAATTTCCTACAATGAGATATTCAGTTGAGTTGAAATTACCAAGTTTGGATACAGAGTGTATGATATGTCTCTCAGAGTTCGCAAAGGGTGAAAAGGTGCGCGTTTTGCCTAAATGCAACCATGGTTTTCATGTTCGATGCATTGACAGATGGCTAAAGGATCACTCATCATGTCCCAAGTGTAGACAGTGTCTACTTGAAACTTGTCGAAAGATTGGTGGGTCACAGGTGCAACCAATTGTGTTGCCAGTTCCAGAAATCATTATAAGGATCCAACCACTAGAGCCTGAAGCTTTGGAACATAATTATAGGGaacaaatataa 690 0.3783 MYASTSFTSPLIHELLVKSHTRRLLFQNTNEHQSLKINSRVFTNNGNSTDSNFDAREFDSNVVMIIASLLCCFICLLALNSIIRCALLRFSNVSINNDSFSSSSSNPSPQLVNKGIKKKILKKFPTMRYSVELKLPSLDTECMICLSEFAKGEKVRVLPKCNHGFHVRCIDRWLKDHSSCPKCRQCLLETCRKIGGSQVQPIVLPVPEIIIRIQPLEPEALEHNYREQI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00690 229 Pfam Ring finger domain 141 184 IPR001841 -
Tsu02g00690 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 188 IPR013083 -
Tsu02g00690 229 SUPERFAMILY RING/U-box 121 189 - -
Tsu02g00690 229 SMART ring_2 142 183 IPR001841 -
Tsu02g00690 229 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Tsu02g00690 229 PANTHER RING-H2 FINGER PROTEIN ATL78 1 228 IPR044602 GO:0016567|GO:0016740
Tsu02g00690 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 228 - -
Tsu02g00690 229 CDD RING-H2_PA-TM-RING 141 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00690 Tsu-Chr2 5836686 5837375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00690 58 188 C3H Transcription Factor Family AT3G10910 50.365 1.15e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00690 K19040 - gmx:100780127 279.256