Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00689 ATGTATGCATCTACTTCCTTTACTTCAAAACTCATCAATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAGACACAATTGACCATCAATCACCAACCACCTCCCCTACTTTAACAAACAACCATAATTCAACCGACTCATATTTCGGAGTTCATGAATTTGATTCAAATGTTGTGATGATACTTGCAGTCTTATTATGTGCTCTTATTTGCTCACTTGCATTAAATTCGATCATAAGGTGTGCCTTAAGATTTTCAAACGTAGCCATCAACAACGGTTCTTCTTCGAGTTCGAGCAACAACCCTTCAACTAATCATGATGAATTGGTCAACAAAGGAATCAAAAAGAAAGCTCTCAAGAAATTTCCTACAATGAGTTATTCAACCGAGTTGAAACTACCAAGTTTAGATACAGAGTGTATGATATGTATCTCAGAGTTTGTGAACGGTGAAAAAATGCGCATTTTACCTAAATGTAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGCTAAAGGAACACTCTTCGTGTCCCAAATGTAGACAATGTCTTCTTGAAACTTGTCGTAAAATTGGTGGATCGCAGGTGCAACCGGTTGTGTTGCCAGTGCCAGAGACCATTATAACGATCCAACCCCTGGAGCATGAAGCTTTAGAACGTAGCTATAGAGAAatataa 690 0.3826 MYASTSFTSKLINELLVESHTRRLLFQDTIDHQSPTTSPTLTNNHNSTDSYFGVHEFDSNVVMILAVLLCALICSLALNSIIRCALRFSNVAINNGSSSSSSNNPSTNHDELVNKGIKKKALKKFPTMSYSTELKLPSLDTECMICISEFVNGEKMRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKIGGSQVQPVVLPVPETIITIQPLEHEALERSYREI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00689 229 SMART ring_2 143 184 IPR001841 -
Tsu02g00689 229 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Tsu02g00689 229 SUPERFAMILY RING/U-box 121 190 - -
Tsu02g00689 229 Pfam Ring finger domain 142 185 IPR001841 -
Tsu02g00689 229 PANTHER RING-H2 FINGER PROTEIN ATL78 1 229 IPR044602 GO:0016567|GO:0016740
Tsu02g00689 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 189 IPR013083 -
Tsu02g00689 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00689 Tsu-Chr2 5831955 5832644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00689 57 189 C3H Transcription Factor Family AT3G10910 51.128 2.54e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00689 K19040 - gmx:100780127 300.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00689 02 5831955 5832644 Tsu07g01350 07 11898437 11899486 PCT