Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00688 ATGTATGCTTCTACTTCATTTACCTCACTTCTCATAAATGATCTTCTTGTTGAATCCCACACAAGAAGGTTACTAACCAACTCCCATGTTTTAACAAACAACCATAATTCAACTGACTCATATTTTGGAGCTAGTGAATTAGATTCAAATGTTGTGATGATACTTGCAGTCCTATTATGTGCTCTTATTTGCTCACTTGCATTAAACTCCATCATAAGGTGTGTCCTAAGGTTTTCAAACATAGCCATCAACAATGACGATTCTTCGAGTTCAAGTAACAATTCTTCACAAAAATTGGCCAACaaaggaataaaaaagaaagctCTCAAAACATTCCCAACGGTGAGCTATTCGACTGAGCTGAAACTACCTGGTTTGGATACAGAGTGCGTGATATGTATCTCAGAGTTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGTAACCATGGTTTTCATGTCCGTTGCATTGACAAATGGTTAAAGGAACACTCGTCATGTCCCAAATGTAGACAATGTCTTCTTGAAACTTGTGAAAAGATTGTTGGGTCGCAGGTGCAATCGGTTGTGTTGCCGGTGCCAGAAATCATTATAAGGATCGAACCACTAGAGCACGAAGCTTTAGAACGTAATTACCTTCCTTAA 648 0.3781 MYASTSFTSLLINDLLVESHTRRLLTNSHVLTNNHNSTDSYFGASELDSNVVMILAVLLCALICSLALNSIIRCVLRFSNIAINNDDSSSSSNNSSQKLANKGIKKKALKTFPTVSYSTELKLPGLDTECVICISEFTKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCEKIVGSQVQSVVLPVPEIIIRIEPLEHEALERNYLP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00688 215 SMART ring_2 130 171 IPR001841 -
Tsu02g00688 215 SUPERFAMILY RING/U-box 108 177 - -
Tsu02g00688 215 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Tsu02g00688 215 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 213 - -
Tsu02g00688 215 CDD RING-H2_PA-TM-RING 129 172 - -
Tsu02g00688 215 Pfam Ring finger domain 129 172 IPR001841 -
Tsu02g00688 215 PANTHER RING-H2 FINGER PROTEIN ATL78 1 213 IPR044602 GO:0016567|GO:0016740
Tsu02g00688 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00688 Tsu-Chr2 5828762 5829409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00688 39 176 C3H Transcription Factor Family AT3G10910 53.191 1.82e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00688 K19040 - gmx:100780127 290.041