Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00684 ATGAATATAATGGATTATGAGCAATTTGATTACTCATTTATCCCTCCTTGCATGAATCAGCTACATGAGTGTAGCTTAGAAAATGCATCTACATTCCAAACAGAAGATTTCTTATCTCCAAATACAATCTTAGATGAAATATTATTTGATCAAGATCAATTAGAAGATCTCTTATCTCCAAATACCATCCTAGACGAAATTTTCGATCAGGATGAGTCTATGGAAGGATTGCTGCAGCAACACACAAACCATGAATTCGATGCCATAAACCACGACCAGACAATGCCTCTAGGGAATGAATTGTGTCATCAAGTTACCGAGAAAGGCCGCAAAAATGATGATTCTTATTGGAAGGTAGTTCAAGAAGAGTTAATGGAAGAGACAAGTTTAGTTGATCTCTTGCTGATAGGAGCTGAAGCTGTTGAATCACAGAACGTGACTCTTGCTTCTGACATAATTGAAAAACTAAACAATGCCTCGTCTTTAGAAAAAGGCGATAGTTTATTGAACAGGCTGTGTCCTTTCTTTACTCAAGGTTTGTATTATAAAACTACAAATGCTGCTGAATTCCACTGTGATCATGTTTCTACACAGACAAGCACATTCTGTGTGTTTCAGATACTTCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTCACAGCAAACCAAGCAATTTTAGAAGCTACGGATGGTGCTGAACAAGTTCATGTCATTGATTTCGATATCATGGAGGGAATCCAATGGCCACCATTGATGGTTGACTTTGCAATGAGAAAGACCACTACTTCCCTTAAAGTAACAGCAATCACAGTGGATCAGCAAAGTGCAGCCTCAGTTCAACAAACAGGAAGAAGGCTCAAAGAGTTCGCGGATTCAATCAATTTTCCATTCGTGTTCGATACGATGATGATGGTGAGTGAAGAAGATTTTCAAGGAATTGAACTTGGTGGCACACTTATTGTCAATTGTATGATACATCAGTGGATGCCAAACAGAAGTTTCTCACTGGTCAAAACTTTtcttaatggtgtaagaaaattaTCGCCTCGGCTTTTTGTTTTAGTAGAAGAAgaactatttaatttttcaagaCTCAAATCTATGTCTTTTGTGGAGTTTTTCTGTGAGGCTTTACATCATTATATTGCACTTTGTGATTCACTTGTTACTACCCTTTGGAGTAGTCATAAAATGGAGTTAGCCCTTATAGAGAAAGAAGTTTTGGGAAACAGAATATTAGACAGTGTAAGACAGTTTCCTTGTGAAAGAGGGGAGAGAATATTGTGGGAAGAaaggtttttttattcattgaaaGGGTATAAACGTTTTGGTATGAGTACATGTAATATTTCACAGGCTAAGTTATTAGTTAGCTTGTTTGGTAAAGGATATTGGGTGCAATTTGAGAATTTTAGGTTGGCTTTGTGTTGGAAGTCAAGACCTTTGACTTCTGTTTCAATCTGGGTACCAACAGATTATATTATGAGAGACAAGGTCAAATAG 1506 0.3592 MNIMDYEQFDYSFIPPCMNQLHECSLENASTFQTEDFLSPNTILDEILFDQDQLEDLLSPNTILDEIFDQDESMEGLLQQHTNHEFDAINHDQTMPLGNELCHQVTEKGRKNDDSYWKVVQEELMEETSLVDLLLIGAEAVESQNVTLASDIIEKLNNASSLEKGDSLLNRLCPFFTQGLYYKTTNAAEFHCDHVSTQTSTFCVFQILQELSPYVKFAHFTANQAILEATDGAEQVHVIDFDIMEGIQWPPLMVDFAMRKTTTSLKVTAITVDQQSAASVQQTGRRLKEFADSINFPFVFDTMMMVSEEDFQGIELGGTLIVNCMIHQWMPNRSFSLVKTFLNGVRKLSPRLFVLVEEELFNFSRLKSMSFVEFFCEALHHYIALCDSLVTTLWSSHKMELALIEKEVLGNRILDSVRQFPCERGERILWEERFFYSLKGYKRFGMSTCNISQAKLLVSLFGKGYWVQFENFRLALCWKSRPLTSVSIWVPTDYIMRDKVK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00684 501 PANTHER OS12G0162700 PROTEIN 5 490 - -
Tsu02g00684 501 ProSiteProfiles GRAS family profile. 121 490 IPR005202 -
Tsu02g00684 501 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 490 IPR005202 -
Tsu02g00684 501 Pfam GRAS domain family 130 489 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00684 Tsu-Chr2 5802933 5804438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00684 203 489 GRAS Transcription Factor Family AT1G55580 36.164 2.92e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu02g00684 GRAS 4.5e-77 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00684 - - lja:Lj0g3v0198459.1 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00684 02 5802933 5804438 Tsu02g00684 02 5802933 5804438 ECH