Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00683 ATGGAGTTCTTAGACGAAGATGCGAGACCGAGGTTCATGTTTCAGTCCGGTGCACCAGCAGCCACTGAATCACAGCCTTACGAGAAACCAACGAAACCGTTAATCGCTGTAACTGTTGCAATCTCTTCAATCTTCTTCGCTATCGCTTTCTTCGTTTTCGAATCGGAACCTTACAAATCTATTCTCATCTGGTTCGCACTTTCTCTTCTCATTGGTCCTTTTGCTCCGAGCTCAATCACCGGCGGTGATTTCCGTGTCGGACGTGGTCATGTCGTTAATTTTCCTGATCAGGATACCTCGACCGATGATGAAGACCTCAGGAAAAGATCTCAGCAGCGCCGATCTAAGCCTCGTAGATCGGATGATGTTGCGGCTGTAGTTGTTCCGGCTCCGGTGGTTTCTAACGGAAGTGTATCGAAGAATAAAAGTGGAAACGGAGTTGCATTGACGGCGGTGGTGGAGGAAACGGAATGGAACGATGATGACATTGAGATTCTGAAGAAGCAGATGGTGAAACATCCAGTGGGGAAACCAGGACGGTGGGAGGCGATAGCGGAGGCGTTTGGAGGGAGGCACAAGGCGGAAAGTGTGGTAAAGAAGGCGAAGAATTTGGGGGAGAAGAAGGTTGATGATTCGGATTCGTATGATCAGTTTTTGAAGAAGAGAAAAGCGTTGGATAAGAGACTTGTTGAAGAAGGAGGAGAAGTAGCGACGGTTGAGAAAGGTGAAAGTGTTTGGAGTTCAAATGAGGATATTGCTTTGTTGAATGCTTTGAAAgcttttcctaaagatgtttcAATGAGATGGGAGAAAGTTGCTGCTGCTGTTCCGGGAAAATCGAAAGCAGCTTGTATGAAAAGAATTGCTGAATTGAAGAAAGGGTTTAGGACGGCGAAATCTGGATCAGAAGTTTAG 915 0.4557 MEFLDEDARPRFMFQSGAPAATESQPYEKPTKPLIAVTVAISSIFFAIAFFVFESEPYKSILIWFALSLLIGPFAPSSITGGDFRVGRGHVVNFPDQDTSTDDEDLRKRSQQRRSKPRRSDDVAAVVVPAPVVSNGSVSKNKSGNGVALTAVVEETEWNDDDIEILKKQMVKHPVGKPGRWEAIAEAFGGRHKAESVVKKAKNLGEKKVDDSDSYDQFLKKRKALDKRLVEEGGEVATVEKGESVWSSNEDIALLNALKAFPKDVSMRWEKVAAAVPGKSKAACMKRIAELKKGFRTAKSGSEV 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00683 304 SUPERFAMILY Homeodomain-like 243 288 IPR009057 -
Tsu02g00683 304 Gene3D - 153 210 - -
Tsu02g00683 304 Gene3D - 238 303 - -
Tsu02g00683 304 SUPERFAMILY Homeodomain-like 154 194 IPR009057 -
Tsu02g00683 304 CDD SANT 246 287 IPR001005 -
Tsu02g00683 304 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 303 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Tsu02g00683 304 SMART sant 242 294 IPR001005 -
Tsu02g00683 304 SMART sant 154 207 IPR001005 -
Tsu02g00683 304 PANTHER TRANSCRIPTION FACTOR MAMYB 1 303 - -
Tsu02g00683 304 MobiDBLite consensus disorder prediction 100 121 - -
Tsu02g00683 304 MobiDBLite consensus disorder prediction 95 122 - -
Tsu02g00683 304 ProSiteProfiles Myb-like domain profile. 238 292 IPR001005 -
Tsu02g00683 304 CDD SANT 157 204 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00683 Tsu-Chr2 5799932 5800978 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu02g00683 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00683 - - gmx:100780658 370.163