Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00682 ATGTTGAAGAAATTGATCCTACTGGTCGTTACATTAAGTTACAGGGCATTTGATGAGGTAAATGGAATTGAGGTTGCATGGGGACAGATTCAGATTGATGAGTTGTTAAAGAGACCGGGTGACTTAGACAGGCTATACTCGGAAGTGCATCTTTTGAAATCACTGAAGCACAATAACATAGTAAGATTATACAATTCTTGGATTGATGACAAGCGAAAGACGGTTAATATGATTACTGAGCTGTTTACATCGGGTAGCCTTAGACAGTATCGTAAAATACACAAGAAAGTTGACTTGAAGGCTGTTAAAGGATGGGCAAGACAGATTCTATTGGGTTTAAACTTCCTCCACAATCATAACCCGCCAATTATACACAGGGACTTGAAATGtgataatatatttatcaatggTCACCAAGGAGAAGTTAAAATTGGCGATTTAGGGCTGGCAACTTTCTTGACGCAGGCTAATGCTAAGACTGTTATAgGTACTCCAGAGTTTATGGCACCTGAAATATATGATGAAAATTACAACGAATTAGCCGACATATATTCATTTGGTATGTGCATGCTTGAGTTGGTGACTTCCGAGAAGCCTTACGGTGAATGCATAAACTCGGCGCAGATATTCAAGAGAGTTTCATCCGGTATAATGCCTGTTGCACTTTCTAAAGTGATAGATCCAGAGATAAGAGCATTTATTGAGAAGTGTCTTGTTCCAGCATCCCAAAGATTGTCAGCAAAGGAGCTTCTGATGGACCCCTTTGTTCAAGTGAATGGCTCAGCAAAGGACCTTTCTTTTCCGTTGCCAGATATTGTTCTTCCCAAATTGGGAGCCTCTGAAAACAGATGCGTGATGTCAGAAGGTCCTGCTAGTGCAGGTATTGAGACTGTTTCTATGGATCTCTGTGACACTAACAAGCTGCCTGTGATCACGGTACTTGATAATTCCACTATTGATGTGTCATCTTCTCCAAGTGTTGAGATAAGAAGGTTGAAGGAAAGTGATACCTTCTTTCTAAAAGGTGATCAAAATGATGAGAATTCTGTATCATTAGTTCTGCGGATAGCTGATCAGAAGGGACGAGCAAGAAATATCCATTTCACCTTCTTCCTTGACAGTGATACTGCTGTCTCAGTTTCAAAGGAAATGGTTGAGCAACCTGAACTTGCTGATCAGAATGTAATATTTATAGCTGAGTTAATTGATCTGTTATTGATGAAATTGGTTCCTAAATGGAAACCTTGTGTAGCAATTGATCATTTGATTTCTGCAAATGGTAAATGGACTAGTGCTAACCAACCGCGTGTCTCGGAATTGGCTAAAAACAAAGGAAGCCCAAAACATTCTACTGAAGTTGCAAGTCCCTCAACCTCATTTGGAAGACCAGCTACAAAAGTGAACGTTGACAATATGGATTTATGTTGTGAGATGTCACATGCTTCTGCAACATCAGGCATCAATGATAAGTTTTCTATGGTTTCATTTATGTCTGCTGAATCAAGATTTGATGGTGGGAGTCAGAGCTCGTTTGCATCTGAAATATGGGGATCATCTGATTATAGGAGCAAGTGTTTAGACACGGGGAGCAACAGTATGGCGAGCTTCTCAAGTTATCCCATTAGTGTTTCCTCCATGTCTGAACTGGATGAAGAGTTGAGAGTAGAGTTAGAAATGATAGAACAGAAACATCAAGAGGCAATTAGAGATTTGTCAAGAAAAAGGTGCCAGGCCATTGAGGAGATTAAAAAGAGAATGTTAGAGAAGATGGTATCATAG 1779 0.3952 MLKKLILLVVTLSYRAFDEVNGIEVAWGQIQIDELLKRPGDLDRLYSEVHLLKSLKHNNIVRLYNSWIDDKRKTVNMITELFTSGSLRQYRKIHKKVDLKAVKGWARQILLGLNFLHNHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATFLTQANAKTVIGTPEFMAPEIYDENYNELADIYSFGMCMLELVTSEKPYGECINSAQIFKRVSSGIMPVALSKVIDPEIRAFIEKCLVPASQRLSAKELLMDPFVQVNGSAKDLSFPLPDIVLPKLGASENRCVMSEGPASAGIETVSMDLCDTNKLPVITVLDNSTIDVSSSPSVEIRRLKESDTFFLKGDQNDENSVSLVLRIADQKGRARNIHFTFFLDSDTAVSVSKEMVEQPELADQNVIFIAELIDLLLMKLVPKWKPCVAIDHLISANGKWTSANQPRVSELAKNKGSPKHSTEVASPSTSFGRPATKVNVDNMDLCCEMSHASATSGINDKFSMVSFMSAESRFDGGSQSSFASEIWGSSDYRSKCLDTGSNSMASFSSYPISVSSMSELDEELRVELEMIEQKHQEAIRDLSRKRCQAIEEIKKRMLEKMVS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00682 592 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 350 402 IPR024678 GO:0004674|GO:0005524
Tsu02g00682 592 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00682 592 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 473 591 - -
Tsu02g00682 592 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 459 - -
Tsu02g00682 592 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 13 459 - -
Tsu02g00682 592 MobiDBLite consensus disorder prediction 448 462 - -
Tsu02g00682 592 Coils Coil 546 577 - -
Tsu02g00682 592 SUPERFAMILY Protein kinase-like (PK-like) 14 257 IPR011009 -
Tsu02g00682 592 CDD STKc_WNK 14 255 - -
Tsu02g00682 592 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 473 591 - -
Tsu02g00682 592 Pfam Protein kinase domain 18 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00682 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Tsu02g00682 592 Gene3D Phosphorylase Kinase; domain 1 9 80 - -
Tsu02g00682 592 Gene3D Transferase(Phosphotransferase) domain 1 82 262 - -
Tsu02g00682 592 MobiDBLite consensus disorder prediction 439 462 - -
Tsu02g00682 592 SMART serkin_6 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00682 592 Gene3D - 348 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00682 Tsu-Chr2 5786298 5790023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00682 99 431 MAP Kinase Kinase Kinase AT1G49160 64.565 5.51e-155 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu02g00682 Pkinase 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00682 K08867 - gmx:121175054 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00682 02 5786298 5790023 Tsu02g00682 02 5786298 5790023 ECH
Tsu02g00682 02 5786298 5790023 Tsu07g01345 07 11849514 11853165 PCT