Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00679 ATGGTTAGAGACGATTTATACATCACCGTTCCGAGTTTATTCCGGTGTCCTATTTCCCTCGATGTCATGAAATCTCCGGTGAGTCTCTGCACCGGAGTTACCTACGACCGTTCCAGTATCCAACGCTGGCTTGATAACGGTAACAACACTTGTCCCGCTACTATGCAGATTCTTCAAACCAAAGATTTCGTTCCGAACCGGACGTTACAGAGACTCATCCAGATCTGGTCCGATTCGGTTCGCCACCGAGTCGACTCGACCGATTCTATTATATCTAATGAATCGGTTGATAAACGTGATCAATTACTTGTTGCTATTACTGATTTAGAGTCAGGTAGTGAGAATCGGTTTGAGTCGCTTGAGAAAATTGTGCGGTTCGCTAAAGATTCTGAAGAGAATAGTGTTTTTCTTGCTAAAACGGAAGGATTCGTTGCTTTGTTGGTAGGTTTTCTCGATAATGTTGATGGCGGAGTTGAACGCAGTGTTGAATTGCTTGAACAAGTTGTTGTTGCTTTGGATTTGGTTCTAAGTAAAATTGAGAATCGTGACTCGATTCTAAAGAGCCAGAAGGAGAAGGAGGTGCAGAGTTTAGATTCTCTGCTTCTTGTTTTGAAACAAGGAAGCTGTGAATCGAAGATTGCTTCGGTTAGGGTTTTGAAATCCATAGCGGTTGATACAGAATCGAAGCTTCTAATAGCGGAAAAAGAAGGTTTAGTATCAGAATTGCTCAAACTAATCATGCCGGAGAAAGATCAGAACCTAATCGAGAACGCACTTTCGTGTCTGGTGGCAATCTCAACGCCAAAACGGAACAAATTGAAACTGATTCATCTCGGAGCCGTGAAGGTATTCTCGAACCTTCTAACTTCTCCGTCTAATTTATGCGTTTCGGTGACGGAAAAGTTACTGAAACTTCTCGAAACGGTGTCATCAACGAAGGAAGGGAGATCGGAGATATGTGAAGAACCGTCATGCGTGGCGGCGATAGTAAACAAGGTTTTAAAAGTGTCCACCGTGGCAACGGAACACGCGGTTACGATACTGTGGAGtgtttgttatttgtttcgtgATCAAAAAGCACAAGAAGCAGTTACGAAAGCTAATGGATTGACGAAAATTTTACTTCTGATGCAGAGCAATTGCACGCCACAAGTTCGTCAAATGTCTGTAGATTTACTTAAGATTTTTCGTGTTAATTCTAAGTCGTGTCTTTCATCGTATGATACTAAAACTACTCATATTATGCCATTTTGA 1254 0.4147 MVRDDLYITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFVPNRTLQRLIQIWSDSVRHRVDSTDSIISNESVDKRDQLLVAITDLESGSENRFESLEKIVRFAKDSEENSVFLAKTEGFVALLVGFLDNVDGGVERSVELLEQVVVALDLVLSKIENRDSILKSQKEKEVQSLDSLLLVLKQGSCESKIASVRVLKSIAVDTESKLLIAEKEGLVSELLKLIMPEKDQNLIENALSCLVAISTPKRNKLKLIHLGAVKVFSNLLTSPSNLCVSVTEKLLKLLETVSSTKEGRSEICEEPSCVAAIVNKVLKVSTVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00679 417 SUPERFAMILY ARM repeat 110 399 IPR016024 -
Tsu02g00679 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 94 IPR013083 -
Tsu02g00679 417 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 417 - -
Tsu02g00679 417 PANTHER WDSAM1 PROTEIN 4 417 IPR045185 GO:0061630
Tsu02g00679 417 SUPERFAMILY RING/U-box 5 78 - -
Tsu02g00679 417 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Tsu02g00679 417 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Tsu02g00679 417 Gene3D - 296 397 IPR011989 -
Tsu02g00679 417 Gene3D - 186 295 IPR011989 -
Tsu02g00679 417 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Tsu02g00679 417 CDD RING-Ubox_PUB 14 56 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00679 Tsu-Chr2 5738249 5739693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00679 1 417 U-box Gene Family AT5G64660 56.075 9.43e-148 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00679 - - cam:101496984 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00679 02 5738249 5739693 Tsu02g00679 02 5738249 5739693 ECH