Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00670 atggcttcttcttcttctctcttcactttctctcttttcattttcttcacaCTCTCCTCCGCCTTACACCACCACCATAACCACTCACCAACACCCACCCCCACCGTCTCTCATTCCGCCGTATCAGAGATCCAACAAGCCTGCAAAGCAACTCGTTTCCCACAACAATGCGAATCATCTCTCACAAATCTCACTACAAATCCCACAACTCTCGAGCTCCTCCAATCCGCCATCTCTCACTCATCGGAAAAACTTGTAACCGCTTTATCAATGGTTAAGGAAATTCTAAAAACCTCTTCCGACAGCCAAAACCGTACCGTCGCTTCCACCACATGTATCGAAACCCTCTCAAATTCACAACACCGCATTTCCACCTCCAACGAAGCCTTAGAACGTGGAAAAATCAAAGACGCTAGAGCCTGGCTAAGCGCTGCTCTCGCTTATCAATACGATTGCTGGAGCGGACTCAAATACGCAAACGACACACACGCCGTCGGTGAAGCTATGGCGTTTATCGATTCTCTCACAATGATCTCAAGCAACGCTCTCTCCATGGCGTTTTCGTACGATATTTACGGAAACGATACGTCGGCGTGGAAATTTCCAACCACCGAGCGCGACGGTTTATGGCAAGAGTCTGGATCGGGAGGAGGATCTGATTTTAAAGGAGAGGTTCCGTTGAATTTGAAGGCGGACGTTACCGTTTGTAAGGGAGGGGAGAAAGGTTGTTACAAGACGGTGCAGGAAGCGGTTAACGCTGCGCCTGATAGCGGTGTTGGCGGGAAGAggtttgttatttatataaaagaaGGGATTTATGAAGAAACTGTTAGGGTTCCGTTAGAGAAGAGAAATGTGGTGTTTTTGGGTGACGGAATCGGGAAGACGGTTATTACCGGGTCAGCTAACGTGGGGCAACCCGGAATGACTACTTACAACTCCGCCACAGTCGCTGTTCTTGGCGATGGATTCATGGCAAAGGATGTAACAATACAAAACACAGCAGGACCTGATGCACATCAAGCAGTGGCATTCAGATCAGACAGTGATCTTTCTGTAATTGAGCATTGTGAATTCTTAGGTAACCAAGATACTCTTTATGCTCATTCCCTGCGCCAATTCTACAAATCATGCCGCATCGAAGGCAACGTGGATTTCATCTTTGGAAATTCAGCTACAATCTTCCAAGACTGTACAGTCCTGGTTCGTCCTAGACAACTCAAGCCAGAGCATGGCGAGAACAATGCCGTCACAGCTCACGGTAGAACCGACCCTGCACAAACTACAGGCTTTGTTTTTCAAAACTGTTTGATTAATGGAACTGAAGATTACATGGCATTGTATCATAGTAAACCTAAAGTGCATAAAAACTATTTGGGTAGGCCATGGAAGGAGTATTCTAGAACAGTTTTTATTAATTCGACATTGGAAGTACTCATTACACCTGAGGGTTGGATGCCATGGAATGGTGACTTTGCACTTAAGACACTTTATTATGGTGAATATGAGAATTCTGGACCTGGTTCTGATTTGTCTCAAAGGGTGTCTTGGAGTAGTAAAATCCCTGCTGAACATGTGGGCAGTTATTCACCGGAGAATTTCATTCAAGGAGGTGAGTTTTCTTCATCTCAGTCATCGGCTCATCGTCGTAGGAGTCATCATCAAAGTACTTATAGGAAGCATCTGTAA 1689 0.4411 MASSSSLFTFSLFIFFTLSSALHHHHNHSPTPTPTVSHSAVSEIQQACKATRFPQQCESSLTNLTTNPTTLELLQSAISHSSEKLVTALSMVKEILKTSSDSQNRTVASTTCIETLSNSQHRISTSNEALERGKIKDARAWLSAALAYQYDCWSGLKYANDTHAVGEAMAFIDSLTMISSNALSMAFSYDIYGNDTSAWKFPTTERDGLWQESGSGGGSDFKGEVPLNLKADVTVCKGGEKGCYKTVQEAVNAAPDSGVGGKRFVIYIKEGIYEETVRVPLEKRNVVFLGDGIGKTVITGSANVGQPGMTTYNSATVAVLGDGFMAKDVTIQNTAGPDAHQAVAFRSDSDLSVIEHCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNSATIFQDCTVLVRPRQLKPEHGENNAVTAHGRTDPAQTTGFVFQNCLINGTEDYMALYHSKPKVHKNYLGRPWKEYSRTVFINSTLEVLITPEGWMPWNGDFALKTLYYGEYENSGPGSDLSQRVSWSSKIPAEHVGSYSPENFIQGGEFSSSQSSAHRRRSHHQSTYRKHL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00670 562 Pfam Pectinesterase 232 537 IPR000070 GO:0030599|GO:0042545
Tsu02g00670 562 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 19 540 - -
Tsu02g00670 562 MobiDBLite consensus disorder prediction 538 562 - -
Tsu02g00670 562 CDD PMEI-like_3 47 185 - -
Tsu02g00670 562 Pfam Plant invertase/pectin methylesterase inhibitor 43 185 IPR006501 GO:0004857
Tsu02g00670 562 MobiDBLite consensus disorder prediction 547 562 - -
Tsu02g00670 562 PANTHER PECTINESTERASE 19 540 - -
Tsu02g00670 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 184 IPR006501 GO:0004857
Tsu02g00670 562 Gene3D - 227 549 IPR012334 -
Tsu02g00670 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 185 IPR035513 -
Tsu02g00670 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 188 IPR035513 -
Tsu02g00670 562 SUPERFAMILY Pectin lyase-like 230 540 IPR011050 -
Tsu02g00670 562 SMART PMEI_2 39 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00670 Tsu-Chr2 5686476 5689099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00670 37 542 Carbohydrate Esterase AT5G09760 63.743 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00670 - - adu:107480269 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00670 02 5686476 5689099 Tsu02g00670 02 5686476 5689099 ECH
Tsu02g00670 02 5686476 5689099 Tsu07g01335 07 11711763 11714207 PCT