Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00669 ATGAGCGGAAGTGGCAGAAAGCTATCATCAAACTGGGATTCAAGAGATGAACCTGAGTTTGCATCTGAGAGTGTTACTAATAGCAATAGTTCAAGGTATTTGGAAAGAAATGATATGCTAAATTCCAGAATGGGATTTTCACGCACAGAACCTTTTTCTggaggtagaggttcaaataAGGATGATGTTAGGAACGAAGACTACAAAGATACTGATGGAAATTACAATATGAAAACGTCTCCAGGGTTTGAGGAAAGGAAAAATACGAAGCATAGTCAATATTCAAAAAATGATTACGGCAGGAGAAGTAGGAGCCAGAGCCGGAGCCCGTCACGTGGTTTTAGGTATTCAGCTGTTGATGATGGGAACAGAATGAGGGCTGGTGGATCGACAAAACCTTGTAGAGATTTTGCTGTTGGAAACTGTAGAAGAGGCAGCCATTGCCATTTCCTTCACCATGATAACCAAAGTTATGAGGATAGCAGGGAAAGTAGACACAGGCAAGATGGACCCAGATATTCTAATCCCCGTGAGAGTGGGGATTATTCTCTTCCAAATCGAATGTCTGATAAAGCTTGTATTAATGCAAAGGGAAGGTGTAGAACGGGAGAATCATGCAGGTATGTCCATCATGACAAATCTGATGGGTTTGATAAAGTTTCCGCATGTGAATCATCCAGGGAAAGGGAAGTTGATAGAAGACACATGGATAATTCATTCAAGCAGGATGCTCAACATTATCCAAACCACAAGAGTAATATCCCTTGCAAATATTTTGCTCTTGGAAATTGTCTTTATGGTAAAGATTGTAGATTTTCTCATGATAGACAATCATTTACTAGCCCTAGATTAAGGGATGATAGATCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGGATAGACAAAAAATGAGCGATTCAGTTACTCCTAATGGAAGGCCAAGGGATGATAGATGGGTTTCAGATGGAAGTATGGCTGATGTAGATAAAGTTCGGGATGGTCCAAAGCAAAATGATTTAGTTGCCATCTCTGATACATCAAAGCTGGTTGAGGACAATAAAAATGGAATTATAAGCGCCCCAGAACCTGGATTCATGACTTGGCCAATGAATGATGGATTGGATCATAGCTTAAACCAGAACAGAGTGCAAAATGAATCACCATTTTCAATTGATAAGAAGGAAGCCAACTGTCGGACAGAAGAAAATGCAGTTGACAACGTTCTCCTTTCTCAGTCACTAGGTGGAGGCATTTGGCCTGGTGATGAAAAAATGTCTCCCGATTGGAATTATGGTGCGAGATCTTCCAGCCATATTAAAGATGAGGATGGGCAGAATAAGCATCAAGTTGCTCCAGGACAAGGACTACATCAGAATGCTCAGAACATAACTGCTTCCCACGTGGTTGGGCAGAGTCAAGCAACAGTTTCCATTGTTCCTCCGAGAGCAAGAATTATTGAAGGTATACAGAACCAGGAACTCTTCACTGAGAAAAACTACATTGTAGAACCAAATATCACAAATGCAAGCCTATCACAAACCAATTCAGTAAATACTCCAACTCAGAACGTAGTCAGCAAAGAACAACTTGCTCAACTTAGCTGCCTCTCGGCCTCTCTCGCACATTTCCTTGGAACAGATCAGCAGCTTTCACAACTTCATTCTACTTTAAATTCCTGTGATGCAAAGGACACTctctttgtaaacaaaattgaagggtCTCATAATCCTGTTTCCATGACATTCATCAAACCAGATCCTGCTATTGGATTGAAGCAGTATGATCCAATGTGTGATAGTATGGAGCCCAAGAATATCAATGCAAGTGGGGTCTCTCCAACCTTTTCTCCTAGTATAAAGATTGCAAAAAATGCAGTGGTAATTCCACCACTGTTATCTAACCCGGGACAAAATTTTGACGATTCTTGTAAAAAGGAGACTAACAAAATGGTAGCTGAAGTACAGCCAAGCTCTCaagttcaaaataaaattacagaAGAGAATAATAGTCCTTTGGAAAACATGGACCAAGATGATGGACCTGATGAAGCCAAGAAAACAAAGGATGTAAAGGGGATTCGTGCATTTAAATTTTCATTGGTAGAGCTCACTAAGGAGATTCTGAAACCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAGGTTACTGAGAAAGTAACCGGTACAGTACAGCGGGTACATATTCCTCAGACACAAGAGAAAATTGAACGATACTTATCAGTTTCGAAACCAAAGCTTAACAAACTTGTACAGGCTTATGTGGAAAAGGTTCAGAAGGCTTAG 2325 0.3931 MSGSGRKLSSNWDSRDEPEFASESVTNSNSSRYLERNDMLNSRMGFSRTEPFSGGRGSNKDDVRNEDYKDTDGNYNMKTSPGFEERKNTKHSQYSKNDYGRRSRSQSRSPSRGFRYSAVDDGNRMRAGGSTKPCRDFAVGNCRRGSHCHFLHHDNQSYEDSRESRHRQDGPRYSNPRESGDYSLPNRMSDKACINAKGRCRTGESCRYVHHDKSDGFDKVSACESSREREVDRRHMDNSFKQDAQHYPNHKSNIPCKYFALGNCLYGKDCRFSHDRQSFTSPRLRDDRSRSNQGEDQVLDRQKMSDSVTPNGRPRDDRWVSDGSMADVDKVRDGPKQNDLVAISDTSKLVEDNKNGIISAPEPGFMTWPMNDGLDHSLNQNRVQNESPFSIDKKEANCRTEENAVDNVLLSQSLGGGIWPGDEKMSPDWNYGARSSSHIKDEDGQNKHQVAPGQGLHQNAQNITASHVVGQSQATVSIVPPRARIIEGIQNQELFTEKNYIVEPNITNASLSQTNSVNTPTQNVVSKEQLAQLSCLSASLAHFLGTDQQLSQLHSTLNSCDAKDTLFVNKIEGSHNPVSMTFIKPDPAIGLKQYDPMCDSMEPKNINASGVSPTFSPSIKIAKNAVVIPPLLSNPGQNFDDSCKKETNKMVAEVQPSSQVQNKITEENNSPLENMDQDDGPDEAKKTKDVKGIRAFKFSLVELTKEILKPTWKDGKITKEDYKAIVKKVTEKVTGTVQRVHIPQTQEKIERYLSVSKPKLNKLVQAYVEKVQKA 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00669 774 SUPERFAMILY CCCH zinc finger 251 275 IPR036855 GO:0046872
Tsu02g00669 774 MobiDBLite consensus disorder prediction 55 73 - -
Tsu02g00669 774 ProSiteProfiles Zinc finger C3H1-type profile. 187 214 IPR000571 GO:0046872
Tsu02g00669 774 SMART c3hfinal6 130 154 IPR000571 GO:0046872
Tsu02g00669 774 SMART c3hfinal6 251 276 IPR000571 GO:0046872
Tsu02g00669 774 SMART c3hfinal6 189 212 IPR000571 GO:0046872
Tsu02g00669 774 Gene3D - 129 215 - -
Tsu02g00669 774 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 772 - -
Tsu02g00669 774 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
Tsu02g00669 774 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 772 - -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 277 302 - -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 1 134 - -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 654 671 - -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 310 336 - -
Tsu02g00669 774 Pfam RNA-binding, Nab2-type zinc finger 192 210 - -
Tsu02g00669 774 ProSiteProfiles Zinc finger C3H1-type profile. 251 277 IPR000571 GO:0046872
Tsu02g00669 774 MobiDBLite consensus disorder prediction 654 688 - -
Tsu02g00669 774 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 153 IPR000571 GO:0046872
Tsu02g00669 774 Gene3D - 216 286 - -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 156 186 - -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 277 345 - -
Tsu02g00669 774 Pfam CCCH-type zinc finger 255 275 IPR041367 -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 83 105 - -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 21 54 - -
Tsu02g00669 774 MobiDBLite consensus disorder prediction 156 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00669 Tsu-Chr2 5673540 5681686 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g00669 zf-CCCH 0.0001 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00669 - K22909 gmx:100783856 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00669 02 5673540 5681686 Tsu02g00669 02 5673540 5681686 ECH
Tsu07g01334 07 11676442 11685589 Tsu02g00669 02 5673540 5681686 ECH