Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00668 ATGGAAACAAATGAACAAAACCGTATTATTCTCCAACAAGATCATCATCAAATTCCTATGAGTTCTTCTTTGATTTGGCCACAAAATAACTACAACAACATGATGATACCACCACTACCACCATCTTCATCAGGTTCTCTAAGTGACATATTAGGGATCCACCAAATTGATCAAGAtgttgaagaacaagaagaagagtTAGGAGCTATGAAGGAAATGATGTACAAGATAGCTGCTATGCAACCTGTGGATATCGATCCCGCAACTATTCGAAAACCAAAGCGAAGAAATGTTCGAATTAGCGACGATCCACAAAGTGTTGCAGCTAGAcatagaagagaaagaattagTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTCTTGAAGAGACAAATTAGGTTGCTTCAATCCACTcctcaaaatcatcatcaacaacaaaatcaattaccaTTTTCATCACAATGCATTAATTCTACTCCTCCAAGTGCTTTGCTATTGTCCACTTCTTCGGGTTGTGACGCTTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACGGCAGCATCCATCGACTTGCCCGCCGGAGTTCAATTTGACACCGGAGGACATTCTCATTCACATGCTTGTGATGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTAA 738 0.3618 METNEQNRIILQQDHHQIPMSSSLIWPQNNYNNMMIPPLPPSSSGSLSDILGIHQIDQDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQNHHQQQNQLPFSSQCINSTPPSALLLSTSSGCDAWPFAPNLLLTSTTAASIDLPAGVQFDTGGHSHSHACDGSSSFNHHEVISE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00668 245 Coils Coil 53 73 - -
Tsu02g00668 245 CDD bHLH_AtIND_like 101 158 - -
Tsu02g00668 245 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 54 233 IPR045843 GO:0003700|GO:0006355
Tsu02g00668 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Tsu02g00668 245 MobiDBLite consensus disorder prediction 223 245 - -
Tsu02g00668 245 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 54 233 - -
Tsu02g00668 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 170 IPR036638 GO:0046983
Tsu02g00668 245 Gene3D - 103 171 IPR036638 GO:0046983
Tsu02g00668 245 Pfam Helix-loop-helix DNA-binding domain 110 149 IPR011598 GO:0046983
Tsu02g00668 245 SMART finulus 106 155 IPR011598 GO:0046983
Tsu02g00668 245 MobiDBLite consensus disorder prediction 228 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00668 Tsu-Chr2 5661707 5662444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00668 69 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 83.146 7.06e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g00668 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00668 - - aprc:113856609 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00668 02 5661707 5662444 Tsu02g00668 02 5661707 5662444 ECH