Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00647 ATGTCAAAAAAAGATACAGAGTTTAGAGTATTAGTGTGTATTCATACCCCTAGAAATGTTCCAACAATGATCAACCTCCTTGATGCCTCTAATCCAACAAAGAAGTCAccaatatgtatatatgttcTCCATTTGGTTGAACTTACCGGTCGAACATCAGCGTTACTCATTGTTCATGCCTCTAGAAAATCAGACAACACTGCTCTCAACAGATCAGAAGCTCAATCTGATCACATAATCAACGCCTTTGAAAACTACGAACAACACACCGAACATGTATCAGTCCAACCTTTAACAGCAATCTCCCCATACTCCACAATGCATGAAGATATATGCAATTTAGCTGAGGAAAAGCATCTTGCATTTATAATCATCCCTTTTCATAAACAACAAACAGTTGACGGAGGGATGGAAGCAACGAACATAGCATTTCGAAATGTTAACCAAAATGTATTAACGAATTCACCTTGTTCCGTTGGAATTCTAGTATATAGAGGATTAAATAGTTCAAATCGTTTAGTTGCTGATCAAATGTCTCATCATGTAGCAGTTTTAATTTTTGGTGGACCAGATGATAAGGAAGCATTAAGTTACGGTTGGAGAATGTCAGAACATTTTGGAATAAGCCTAACTGTTATGTGTTTCGTTCCTGGAGAAGATATAATGATGGTGAATGATAATGCCAacaatcaagagaaacaaagagtGTTGGATGTTGAAACAGATGAACATAATAATGAGAAACAACTTGATGAGAAGTTTTTGCATTGGTTTATGATGTGTCATGTAAATGATGAGTCAATTGCATATATTGAAAAAGTAGTTAATAATGGAGAGGAAACAGTTGGTGCTATAAGGTCGATGGGTGATGTCTTTGGGCTTTTTATTGTCGGGAGAGGACAAGGAAATATATCACCTCTTACAGCAGGACTCACTGATTGGAGTGAGTGTCCTGAGTTAGGAGCTATTGGTGATTTGTTAGCATCTTCTGATTTTGCAACAATTGCTTCAATTTTGATAGTTCAACAATATGTTGGCGCTGGTTCGGAAGATGGATTGGGAACACCAGTGTTAACAAACGAAGATTATGTTAATCATCATTCATCAGTTACCCCACCAAGGGTTTTGGCACCACCGATTTCAGTAGACCTAGAGATTTCGGCGGCGTCTCAACAAAGGAAGAAAGAACTTTGTTTTTTAAATCAACAAGCAAATATGTCTGGTGAAGAAGGTGTTGTTGTTGCCGCTGAGCCAGTTGTTGCTGCAGCTGCAATTCCAGGGGAGCCAATGGATATCATTACTGCTGTACAGCTTGTGTTGAGAAAGTCACGGGCATATGGTGGTCTTGCACGAGGTCTTCATGAGAGTGCTAAAGTGATTGAGAAGCATGCCGCACAGCTCTGTGTTCTAGCTGAAGATTGTGACCAACCTGATTACGTCAAGTTGGTGAAAGCTCTCTGTGCCGAGCACAGTGTTAGCTTGTTGACTGTTCCAAATGCAAAGACCCTTGGTGAATGGGCTGGTTTGTGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTAACCGGTTGCTCTTGCGTGGTTGTCAAGGATTTCGGTGAGGAACACGAAGCATATAATGTGGTTCTTCAGCATGTGAAATCTAACTAA 1650 0.3915 MSKKDTEFRVLVCIHTPRNVPTMINLLDASNPTKKSPICIYVLHLVELTGRTSALLIVHASRKSDNTALNRSEAQSDHIINAFENYEQHTEHVSVQPLTAISPYSTMHEDICNLAEEKHLAFIIIPFHKQQTVDGGMEATNIAFRNVNQNVLTNSPCSVGILVYRGLNSSNRLVADQMSHHVAVLIFGGPDDKEALSYGWRMSEHFGISLTVMCFVPGEDIMMVNDNANNQEKQRVLDVETDEHNNEKQLDEKFLHWFMMCHVNDESIAYIEKVVNNGEETVGAIRSMGDVFGLFIVGRGQGNISPLTAGLTDWSECPELGAIGDLLASSDFATIASILIVQQYVGAGSEDGLGTPVLTNEDYVNHHSSVTPPRVLAPPISVDLEISAASQQRKKELCFLNQQANMSGEEGVVVAAEPVVAAAAIPGEPMDIITAVQLVLRKSRAYGGLARGLHESAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHSVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00647 549 Gene3D - 34 301 - -
Tsu02g00647 549 PANTHER CATION/H + ANTIPORTER 1 374 - -
Tsu02g00647 549 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 435 528 IPR004038 -
Tsu02g00647 549 Gene3D - 417 549 IPR029064 -
Tsu02g00647 549 PRINTS Ribosomal protein S12E family signature 439 452 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu02g00647 549 PRINTS Ribosomal protein S12E family signature 494 515 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu02g00647 549 PRINTS Ribosomal protein S12E family signature 453 469 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu02g00647 549 PRINTS Ribosomal protein S12E family signature 519 532 IPR000530 GO:0003735|GO:0005840|GO:0006412
Tsu02g00647 549 SUPERFAMILY L30e-like 429 547 IPR029064 -
Tsu02g00647 549 PANTHER CATION/H+ EXCHANGER 3 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00647 Tsu-Chr2 5479847 5485384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00647 2 356 Antiporter Super Family AT2G13620 65.826 2.10e-163 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00647 - - pvy:116140351 516.153