Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00645 ATGGGGAGTGAAAATAGTGTAAAGCTTCCTCCTGGGCTTTACTTTGCTCCAACGGATGAAGAATTAGTCCTTCACTTTCTATATTCTAAGGCTTCTTTACCATATCATCCTAACATCATACCTGAACTTCACTTGTCTCAACATGATCCTTGGGAACTATACGGTCAATCGATGTCAAATGGAAATGAGCACTACTTTTTCACCGAAGTGAAGGAAAATAGAATCACTGAAAATGGATATTGGAAGGAAATTGGGATCACAAAACCTATAAATAATTTGGGAATGAAGAAATACCTTGTGTTCAACCTTGGGGAAGGAACTCAAACCAATTGGATAATGGAAGAGTATCATATTTCCTCATATGAATCTAGGAGAAGTCAAAATCAGGATGAGAGTTGGAGCAAATGGGTTTTAtgcaaagtttatgaaaaaaatgtgtCACAACAAGGTGCAAGTTATAGTGAGGAGGATGTTGATGATAATGGATCAGAGGTATCATGGCTAGATGAAGTTTTTATGTCCTTGGATGATGATGATCTTGATCAAACAAGCCTAcctaattag 564 0.3546 MGSENSVKLPPGLYFAPTDEELVLHFLYSKASLPYHPNIIPELHLSQHDPWELYGQSMSNGNEHYFFTEVKENRITENGYWKEIGITKPINNLGMKKYLVFNLGEGTQTNWIMEEYHISSYESRRSQNQDESWSKWVLCKVYEKNVSQQGASYSEEDVDDNGSEVSWLDEVFMSLDDDDLDQTSLPN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00645 187 Gene3D NAC domain 18 148 IPR036093 GO:0003677|GO:0006355
Tsu02g00645 187 SUPERFAMILY NAC domain 5 144 IPR036093 GO:0003677|GO:0006355
Tsu02g00645 187 ProSiteProfiles NAC domain profile. 9 144 IPR003441 GO:0003677|GO:0006355
Tsu02g00645 187 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 3 182 - -
Tsu02g00645 187 Pfam No apical meristem (NAM) protein 10 118 IPR003441 GO:0003677|GO:0006355
Tsu02g00645 187 PANTHER NAC TRANSCRIPTION FACTOR 56 3 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00645 Tsu-Chr2 5468924 5471565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00645 1 145 NAC Transcription Factor Family AT1G77450 39.375 6.71e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g00645 NAM 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00645 - - mtr:MTR_8g093790 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00645 02 5468924 5471565 Tsu02g00645 02 5468924 5471565 ECH