Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00642 ATGAAAATGCAAGGCTGTGAAGTTGAAGCCATTGGCATATACTACAAAATTCACACAAACAAAACAGAACACCCTTTTAAAATCTTCAGCAAATCTCCACAACTAGATAATGCCAATGGTCAAGAAATAGAAGAGGAAGAAGCAAGAGTTGAAAAAAGTTGCAGTGGAGTTAGGCATGTGCTAAAAAATGTGAGCTTTCAGGCCAGACCATGGGAAATCCTAGCAATTGTTGGACCAAGTGGAGCTGGAAAGTCATCACTACTTGAGATCTTAGCAGGTAAACACAGTCCACAAAAAGGGTCAGTGTTGTTGAACCAAAAACCAGTAGACAAATCTCAGTTCAGAAAGCTATCAGGTTATGTTACTCAAAAGGACATTTTGTTTCCCTTACTTACGGTTGAAGAAACCATGATGTTCAGTGCAAAACTAAGGCTAAAGCTTCCTCAACAACAACTATGTTCAAGGGTCAAGTCATTGATTCAAGAGCTTGGACTTGATCATGTTGCGAGAACTCGAATTGGTGACGATCGAGTCCGAGGTATATCAGGCGGTGAAAGGCGCAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTTTTGATTCTTGATGAACCAACTTCAGGGCTTGATAGTACTTCAGCTTTGCAAATAATTGATATGCTTAAGGTTATGGCTGAAACTAGGGGAAGAACTATAATACTAAGTATTCATCAACCTGGTTTCAGAATAGTGAAGCTGTTCAAttcattgttgttgttggcTAATGGTTCTGTGTTACATCATGGAACTGCTGAATTACTGAGTTTGAATTTGAGATTGATGGGTCTAGAGCTTCCACTACATGTTAACTTAGTTGAATTTGCTATTGATTCCATTGATATCATtcaacaacagcagcagcaacacTGTCAGGTGGAAACCGAACCGCCGAGACGATTGTTAGGAACAATGCAACAGAAGAAAGGTGGTGatgatgaacaacaacaacaatcaggTGAGAGTAAAAGTGGTAAGTTCACTTTGCAACAGCTATTTCAACAATCTAAGGTAATTGATGAAGATATCATCAATAGTACTGGAATGGATTTCTCTTATGATTTTGCAAATTCTAGATTGAGTGAAACTATGATTCTAACTCATAGATTCTCTAAAAACATATTTCGCACAAAAGAGCTATTTGCATGTAGGACAATTCAGATGCTGATTTCAGGACTAGTTTTAGGATCAATCTTTTGCAACCTCAAAGATGATATAAAAGGAACACAAGAAAGAATTGGTCTATTTGCTTTCATATTAACTTTTCTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTCTACAAGAAAGAGAGATTCTAATGAAGGAAACATCTTGTGGAAGCTACCGTGTATCGTCTTATGCTATTGCAAATGGCTTAGTTTACTTGCCATTTCTTCTAATCCTAGCCATTTTGTTCACAGTTCCAGTATACTGGCTAGTTGGACTAAACAGAAACTTCACTGCTTTTTTGCACTTTCTGTTACTGATATGGCTTGTTCTTTACACAGCCAATTCAGTTGTGGTGTGTTTCAGTGCTCTTGCGCCTAATTTCATTGTTGGGAATTCAATGATTAATGGTATTATAGGttctttcttcttgttctctGGTTACTTCATATCAAACCATGAGATTCCTAGTTACTGGATTTTCATGCATTATATATCACTTTTTAAGTATCCCTTTGAAGGGTTTCTGATAAATGAGTTCTCCAACTCAAAAAAGTGTTTGGAGTACATGTTTGGTGCATGTGTGATGAAAGGAGAGGATGTGCTTAAAGAAGCAGGGTATGGAGAAGGTAGTAGATGGAAGAATGTTGGTGTCACTGTTTGCTTCATCATGTTTTACAGATTCATTTCCTATGTTATTCTAAGATACAAATGTTCACAGAGAGGTGTTAACAGTGGCAATTCTGTCATTTGA 1968 0.3567 MKMQGCEVEAIGIYYKIHTNKTEHPFKIFSKSPQLDNANGQEIEEEEARVEKSCSGVRHVLKNVSFQARPWEILAIVGPSGAGKSSLLEILAGKHSPQKGSVLLNQKPVDKSQFRKLSGYVTQKDILFPLLTVEETMMFSAKLRLKLPQQQLCSRVKSLIQELGLDHVARTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTAELLSLNLRLMGLELPLHVNLVEFAIDSIDIIQQQQQQHCQVETEPPRRLLGTMQQKKGGDDEQQQQSGESKSGKFTLQQLFQQSKVIDEDIINSTGMDFSYDFANSRLSETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFCNLKDDIKGTQERIGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTVPVYWLVGLNRNFTAFLHFLLLIWLVLYTANSVVVCFSALAPNFIVGNSMINGIIGSFFLFSGYFISNHEIPSYWIFMHYISLFKYPFEGFLINEFSNSKKCLEYMFGACVMKGEDVLKEAGYGEGSRWKNVGVTVCFIMFYRFISYVILRYKCSQRGVNSGNSVI 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00642 655 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 642 - -
Tsu02g00642 655 MobiDBLite consensus disorder prediction 318 338 - -
Tsu02g00642 655 CDD ABCG_EPDR 51 264 - -
Tsu02g00642 655 SMART AAA_5 70 288 IPR003593 -
Tsu02g00642 655 Pfam ABC transporter 61 209 IPR003439 GO:0005524
Tsu02g00642 655 MobiDBLite consensus disorder prediction 323 338 - -
Tsu02g00642 655 Pfam ABC-2 type transporter 377 585 IPR013525 GO:0016020|GO:0140359
Tsu02g00642 655 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524
Tsu02g00642 655 Gene3D - 46 351 IPR027417 -
Tsu02g00642 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 269 IPR027417 -
Tsu02g00642 655 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 1 642 - -
Tsu02g00642 655 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 45 282 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00642 Tsu-Chr2 5441815 5444266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00642 59 307 Calmodulin-binding Proteins AT2G36910 22.989 1.38e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00642 K05681 - gmx:100789722 1031.55