Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00636 ATGAATGATGAGACTCATAGTACTTTGCCAAATGGATTCAACACAGAAACTCCTGAAAATCATTGTTTAAAAACaaacaccaccaccaacaataataacaacaacaacaatcatcatcataataataGCAATAAAGAACAAGACCGTTTTCTACCTATAGCAAATGTTGGTAGAATAATGAAAAAAGTTATTCCACCAAATGGAAAAATCTCTAAGGACGCCAAAGAGACGGTACAAGAATGTGTGTCGGAGTTCATAAGTTTTGTCACAGGGGAAGCATCGGATAAATGTCAAAGAGAAAAACGAAAGACAATTAATGGCGATGATATCATTTGGGCTATTACAACTTTAGGCTTTGAAGATTATGTGGAACCATTAAAATCTTACCTTCAAAAATATAGAGACATTGAAGGTGAGAAAGTTAATGTTCCAAAACAACAAAGATCTGAGCAAAGGTTACATCATGATCAACATCATAATCAAGATGAATTTAATAATCAACATTTCAACACTAGTGTATATACTTCAACAAATCTCATGTCTCAACCTCCTTATGTGACCAATGATCAACAATATCCATTACCTTTctcatcaaattcaattcaaaagCAATTACGGCCGCAAGATCAGATTGATTCAATAGGTCATTGCAAACTCAGCCCACCGCCAAGTCCACCATGTTATAGTCCAGCACTACCGTCGTCACCATCTCCGTTCGCCGCTGTCCCATCACATGCGGTGGTGATAGTGGCAACGAGAGTGTTGATTGGAATAGCGGAAGACGGGACTATCGTGATGACGCTGAAGGAAGGTAAGAAGACAAAACGACACCGGAAGGCAAAACCCTATCAGTCTCCATTCCGGCGACCCTCTCATTTGCGGCCACCATCTTCATTGGCTATTGCTCCTCTCATTGCCGCCGCAGCTTCTCCTCATCTTCGCCGTAGCTTCCCCTCATCGCAGGATTTTGGGACTGGATTTTTGGTCTGGTTTAGGCAAGATTTCTCAGGATTTGAGATTGATTTATGCAAGATTTTCGGTCAAATAACCAAGATTGTGTTTTCTACTCATGCTTTACTTTACCTACTAGAGTTCTTCAAATATGCTATTCCTTCTGGACTCATGTTTTGTTTTGAATGGTGGTCCTTTGAGCTGCTTATATTAATTGCTGGGATTTTACCTAATCCTCAACTTGAAACCTCAGTTCTTTCTGTCTG 1217 0.3772 MNDETHSTLPNGFNTETPENHCLKTNTTTNNNNNNNNHHHNNSNKEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYRDIEGEKVNVPKQQRSEQRLHHDQHHNQDEFNNQHFNTSVYTSTNLMSQPPYVTNDQQYPLPFSSNSIQKQLRPQDQIDSIGHCKLSPPPSPPCYSPALPSSPSPFAAVPSHAVVIVATRVLIGIAEDGTIVMTLKEGKKTKRHRKAKPYQSPFRRPSHLRPPSSLAIAPLIAAAASPHLRRSFPSSQDFGTGFLVWFRQDFSGFEIDLCKIFGQITKIVFSTHALLYLLEFFKYAIPSGLMFCFEWWSFELLILIAGILPNPQLETSVLSV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00636 405 MobiDBLite consensus disorder prediction 1 40 - -
Tsu02g00636 405 SUPERFAMILY Histone-fold 47 164 IPR009072 GO:0046982
Tsu02g00636 405 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu02g00636 405 Gene3D Histone, subunit A 36 172 IPR009072 GO:0046982
Tsu02g00636 405 MobiDBLite consensus disorder prediction 1 48 - -
Tsu02g00636 405 MobiDBLite consensus disorder prediction 275 294 - -
Tsu02g00636 405 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 208 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu02g00636 405 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Tsu02g00636 405 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Tsu02g00636 405 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Tsu02g00636 405 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 208 - -
Tsu02g00636 405 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00636 Tsu-Chr2 5402748 5410951 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00636 45 214 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.934 5.95e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu02g00636 CBFD_NFYB_HMF 7.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00636 K08065 - gmx:100778216 323.553