Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00627 ATGGCGAACAAGAGCGTGAAGAAACCACAGAGTCTCAACGATAGTCATTATCGCTTCCTTCAAGATCTCTCTGCTCCTCCCAAAACCTCTTCCAAACCACTCGATCATCAATACGATACTCCGATTCAACCTCGAAACCTCATCTATCAAGACGTTGATGATGATACTATTCCTCAGTTTTCTGCTATCACTGACTTCGATTCTCCAATCGGTCAAAATTCACCGGAGAATATTGAACCAGCTAGTGTAGAAAATGCTCCGCTTCGTAATGAGGTTCCGAAGTTTTCTGATAATTGTTTACTTAGTCAAAATTCTTCTCTGGAGAATCGCCAATCACTTGTGGTAGAAAAAGCTCCTCTTTCTAACGAGGTTCCAAAGTTTTTTGATGATTATTCTCATCGTCAAAATTCTCGGGAGAATCGCAAACCAGTTAAGGCAGTAGAAGCTCCTCTAAGTCAAAATTATGCAGAGAATCGCCAACCAGTTAAGCCAGTAGAAGCTCCTCTATGTCAAAATTATGCAGAGAATCGCCAAACAATTAAGGTAAAAGAAGCCCTTCTTCCAAAGGAGGAGGTTCATCAGGGTTTGGATAATAATTCTCTTAAGGAGGAAAAGAATACCAAGGTTAAGGTCCAAGGGCGCCGCCGCCTTTGCAAAGCTGCAGATAAAGAGGCTGGCAAAAAGGTAGCAGTTGATGAACCTAAGCTTGATGATCTTGCTGACTTTGATTCGCCTATTCCGGTGCAGAAAAATGTGATTGAGATTGAGGAAAGTAAGGGTAAGAGTCAAATTAGGGATATTTTGAATGACCTAACCTCCAGGTTTGATGCGCTATCGGTTGAGAAGAAGCCGCAGCCCAAACTGGTGTCAAAGCCTGTTGAGCGTTTTGAAGGAGGGAAAGAAATTTTTGAAGATGAGGGTTTGGAGTTTGGGAGTGCTGGATCTTCATTTTCTCAGAAACAGGAGCCCCATGACACCTCATCAAAGGATACTAAGAATGATAGTGGTGATATTGAGTATGAATCAGATGATTCGGTTGAAGTGTTGGATCACTTTGAACCTGAGAATGATGGCTCTATAACATTGAGTGACCCACGGTCTACATATAAGTTGCAGCCTAAGATTGCGAAAATGTTGTATCCACATCAGCGGGAAGGATTAAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGAAAAACAATGCAgATTTGTGGCTTTCTGGCTGGACTGTTTTATTCACGGTTAATTAGAAGGGTATTGGTTGTGGCCCCAAAAACACTATTGCCACATTGGATCAAAGAGTTATCGGCTGTTGGTCTATCTGAGAAGACACGAGAATATTTTGGATCCTGTGCAAAGCTCAGACAATATGAACTGCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACTTATGATATTGTCCGCAACAATACCAAGTCCTTACAGGGACATAGTTATGTagatgaggatgatgaagatGGCCCCACGTGGGACTACATGATACTTGATGAGGGCCACCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAgGAATTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAAAAAATGGTTCAAAGATAAATATGAAATGCCTATACTTCGTggaaatgataaaaatgcttcTGACAGAGACAAGCGTGTTGGTTCTGCTATAGCGAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGATACGGAAAAAACAACAGCAAAGCTTTCTCAGAAACGAGAAATCATTGTGTGGCTTCGGTTGACAAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGTTCACCACTGGCTGCCCTTACGattttgaagaaaatatgtGATCATCCACTTTTGTTGACCAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCCATGCTAAAGCCAGATGAGGTTAATGTTGCTGAGAAATTGGCGATGCATATAGCAGATGTTGCAGAAACTGATAAGTTTAAAGATGAGCATGATGTATCATGCAAAATTACTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGGGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCATAACATCTAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAAGCCTGTGATAGAATAAAAGTTGTTGATGATTTCCAAGATGGCGTTGGAGCTCCAATATTTCTGTTGACATCTCAGGTCGGTGGTTTAGGACTGACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGCCAAAAGAAAGATGTTATTGTCTATAGACTAATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAAAAGAAAGAACAAACTCGGTACTTTTGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTCCCAAGAGAAGGATTTGATGTGTCTGTTACCCAACGGCAATTGGCTGAGAAACATGATTCTCAGCATATAGTGGATGACTCTTTCCATGCACACATAGAGTTCCTGAAAAGTCAGGGCATAGCTGGAATTAGTCACCACAGTTTACTGTTTTCCAAGACAGAGGCAGTTCAAGAAGCTCCTGAGCATGAAGTAACAAGGGTTCATAATACTCACTATATGGGAACCTCGTCGTCGTCATCATATTCACATGAGCAAATTGTTGATGGAGCTGCGTTTGCTTTTAATCCTAAGGATGTTAATTTACACAAAAAAGACTCTTCTCCAAGCAGTGTTGGTAAATTGACTGAGTTAGAAATCAAAGATAGAATTTACCGGCTCTCCCAAATGCTCTCAAATACGGCGATGGTTTCTAAATTACCTGACAAAGGAGAGAAACTTAAAAATCGGATTGGGGAGCTGAATCGAGAGCTTACTAAACTGAAGATGGAGCAAACAAACGTAGTTGATTTGGATGATATTACCGATGAATTTGAAAGGGTGTTAAATGTAtag 3258 0.4036 MANKSVKKPQSLNDSHYRFLQDLSAPPKTSSKPLDHQYDTPIQPRNLIYQDVDDDTIPQFSAITDFDSPIGQNSPENIEPASVENAPLRNEVPKFSDNCLLSQNSSLENRQSLVVEKAPLSNEVPKFFDDYSHRQNSRENRKPVKAVEAPLSQNYAENRQPVKPVEAPLCQNYAENRQTIKVKEALLPKEEVHQGLDNNSLKEEKNTKVKVQGRRRLCKAADKEAGKKVAVDEPKLDDLADFDSPIPVQKNVIEIEESKGKSQIRDILNDLTSRFDALSVEKKPQPKLVSKPVERFEGGKEIFEDEGLEFGSAGSSFSQKQEPHDTSSKDTKNDSGDIEYESDDSVEVLDHFEPENDGSITLSDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFYSRLIRRVLVVAPKTLLPHWIKELSAVGLSEKTREYFGSCAKLRQYELQYILQDKGVLLTTYDIVRNNTKSLQGHSYVDEDDEDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYEMPILRGNDKNASDRDKRVGSAIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKREIIVWLRLTNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPDEVNVAEKLAMHIADVAETDKFKDEHDVSCKITFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSKGYDFLRIDGTTKACDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEKKEQTRYFCQQDLKELFSLPREGFDVSVTQRQLAEKHDSQHIVDDSFHAHIEFLKSQGIAGISHHSLLFSKTEAVQEAPEHEVTRVHNTHYMGTSSSSSYSHEQIVDGAAFAFNPKDVNLHKKDSSPSSVGKLTELEIKDRIYRLSQMLSNTAMVSKLPDKGEKLKNRIGELNRELTKLKMEQTNVVDLDDITDEFERVLNV 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00627 1085 Pfam Helicase conserved C-terminal domain 735 847 IPR001650 -
Tsu02g00627 1085 SMART helicmild6 764 847 IPR001650 -
Tsu02g00627 1085 SMART ultradead3 374 573 IPR014001 -
Tsu02g00627 1085 MobiDBLite consensus disorder prediction 1 37 - -
Tsu02g00627 1085 MobiDBLite consensus disorder prediction 312 339 - -
Tsu02g00627 1085 Gene3D - 634 933 IPR027417 -
Tsu02g00627 1085 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 738 897 IPR001650 -
Tsu02g00627 1085 PANTHER SNF2/RAD54 FAMILY MEMBER 324 959 - -
Tsu02g00627 1085 CDD SF2_C_SNF 727 858 - -
Tsu02g00627 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 615 IPR027417 -
Tsu02g00627 1085 Gene3D - 354 614 IPR038718 -
Tsu02g00627 1085 Pfam SNF2-related domain 396 685 IPR000330 GO:0005524|GO:0140658
Tsu02g00627 1085 MobiDBLite consensus disorder prediction 323 339 - -
Tsu02g00627 1085 PANTHER OS04G0692700 PROTEIN 324 959 - -
Tsu02g00627 1085 Coils Coil 1045 1065 - -
Tsu02g00627 1085 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 391 565 IPR014001 -
Tsu02g00627 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 907 IPR027417 -
Tsu02g00627 1085 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00627 Tsu-Chr2 5266456 5275563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00627 379 901 RAD5 or RAD16-like Gene Family AT1G02670 24.742 1.15e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu02g00627 SNF2_N 2e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00627 K20093 - gmx:100779283 1443.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00627 02 5266456 5275563 Tsu02g00627 02 5266456 5275563 ECH