LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g00626	ATGTCTGATCCAAAGCATGATGTGTTCTTGAGCTTTAGAGGAGAAGATACCCGTGACAACTTCACAAGTCATCTTTATGCAGAATTGTGTAGGAAAAAGATTGAAACATTCATAGATAATAGACTCAGAAGAGGCGAAGAGATTTCACCAACACTGTACAGAGCAATAGAAGAATCAACAATTTATGTGGTCATTTTGTCAGAACACTATGCTTCTTCCACTTGGTGCTTAGATGAACTCACAGAGATACTGAAATGTAAGGAGAGATATGGAAGGGAAGTGATACCGGTGTTCTATAAAGTGGATCCGTCAAATGTTAGGCATCAAAGACAGAGTTATGCAGATGATTTAGTTAAGCATCAGCAAAGATTTGGTAGCAAAGTGGACGCTTGGAAGGCTGCTCTAACCCAAGTAGCTGGACTCTCTGGCTGGGATTCACAAGTAACCAGACCAGAAAGCACACTTGTTACAAAGATTGTGAaagatattttgaaaaaattgaatcgTTGTTTCTTAAGCTATTACGAAGGAATGACGGGAATTGACACTCATGTTGAACAAATTCAATCCTTGTTGCTCCTCGAGTCGCCGGCTGTTCGTATCATAGGAATATGGGGAATGGGAGGGATAGGAAAAACAACAATTGCTAGTGCAGTCTTTGAGAAACTCGCAAGTCAGTTCAGTTCCGACAGCATCAGTTCCAACAGCATCGTTCTAAATGTTCAACAAGAAATAGAAAAAGCTGGACTAGACCATGTAAAAAgcaaatatttatcaaaacTTCTAGAGGAAGACATTACATCCTCTGAATGCAACTTTTCATTTGATCCAAGGCTCAAACGGACAAAGGTTCTTCTTGTTTTTGATGATGTAAAAGATTCTGATCAACTTAGAGATTTAATAGGAACACATAGTAACTTTGGTCAGGGGAGTAGAATCATTGTGACTAGTAGAGACAGGCAAGTGCTTGAGAATGCCAATGCTGATGAAATATATCAAGTTAGGGGAATGGATTATCAAGATTCTCTAGAACTCTTCTGTTTATTTGCCTTTAAACAAAACCATCCAATAGAATCTTATGTGAGCTTAGCGGAAAAGGTTTTAGATTATGCTAAAGGGCTTCCATTAGCTCTCAAAGTTTTGGGCTCATTGCTTTATGGTAAAACAACGGAAGTATGGGAAAGTCAACTGCAAAAGCTTAAAAAGCTTCCCGATCTTAAAATTTTCAGATTGTTGAAGTTGAGTTATGATGGACTTGACGACGAACAAAAGGATATATTTCTTGACATTGCTTGCTTCTATAGAGGAGAATTGGAGAAAGTTGTAGCACAATTATTGGATTGTTGTGGTTTCTCTGCTCGCATTGGAATGGATGTTCTCAAAGATAGGTGCCTTATATCTATTTCAGATGGTAGAATTTGGATGCATGATCTAATACAAGAAATGGGGCATGAAACTGTCCGACTTCAATGTGTCGATAATCCTGGAAAACGTAGTCGATTATGGAAGCCTGGCGACATTTATGATGTTTTAAGTAAGAACAATGGAAAGGGAACAGATGCCATCCAGTGTATATTCCTAGACACAAAGGAAATAAAGAAAGTTCAACTACATGATGATACATTCAAGAAAATGCATAATCTTAGAATGATCAAGTTGTATAAAGGCATGTGTGAAAAAACTAAGTTCTATAAAGGCTATGGGTATGACTCAAATGTGAACTTAGAATTGTCAAAAAACTCAAATGTGACTTTTCATGCATTTCTTAAGAGTTTTCCGgatcatttaaaatttatttattgggaGGCATTCCCTCAAAGATCTTTGCCGCAAAACTTCTGCCCGGAAAATCTTGTTATACTTGAAATGATTTATAGCAATCTTGAAGAACTTTGGAAGGAGAACCAGGCTTTACCAAATTTGAGGCTAAACCTCAAAGACTCTAAGATGCTGAAAGAACTACCAGACCTCTCTTTGTCTCCAAATATTGAAGAAGTAATTTTGAGTGGTTGCGTAAGTTTGATACATGTTTACTCCTCTGGCTTCCTCGAAAATCTTAATAGGTTATGTTTAGATGGTTGTACCAAACTCGAGAGGTTAATGATTCGTAGCAATATTCTATCAAGATCATCTGGATTAGTTGATCTTCATGGTTGTCACAACCTTAAAATCCTCTTATATTGA	2184	0.3654	MSDPKHDVFLSFRGEDTRDNFTSHLYAELCRKKIETFIDNRLRRGEEISPTLYRAIEESTIYVVILSEHYASSTWCLDELTEILKCKERYGREVIPVFYKVDPSNVRHQRQSYADDLVKHQQRFGSKVDAWKAALTQVAGLSGWDSQVTRPESTLVTKIVKDILKKLNRCFLSYYEGMTGIDTHVEQIQSLLLLESPAVRIIGIWGMGGIGKTTIASAVFEKLASQFSSDSISSNSIVLNVQQEIEKAGLDHVKSKYLSKLLEEDITSSECNFSFDPRLKRTKVLLVFDDVKDSDQLRDLIGTHSNFGQGSRIIVTSRDRQVLENANADEIYQVRGMDYQDSLELFCLFAFKQNHPIESYVSLAEKVLDYAKGLPLALKVLGSLLYGKTTEVWESQLQKLKKLPDLKIFRLLKLSYDGLDDEQKDIFLDIACFYRGELEKVVAQLLDCCGFSARIGMDVLKDRCLISISDGRIWMHDLIQEMGHETVRLQCVDNPGKRSRLWKPGDIYDVLSKNNGKGTDAIQCIFLDTKEIKKVQLHDDTFKKMHNLRMIKLYKGMCEKTKFYKGYGYDSNVNLELSKNSNVTFHAFLKSFPDHLKFIYWEAFPQRSLPQNFCPENLVILEMIYSNLEELWKENQALPNLRLNLKDSKMLKELPDLSLSPNIEEVILSGCVSLIHVYSSGFLENLNRLCLDGCTKLERLMIRSNILSRSSGLVDLHGCHNLKILLY	727

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g00626	727	ProSiteProfiles	TIR domain profile.	4	167	IPR000157	GO:0007165
	Tsu02g00626	727	Gene3D	-	173	333	IPR027417	-
	Tsu02g00626	727	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	144	IPR035897	-
	Tsu02g00626	727	Gene3D	Ribonuclease Inhibitor	511	726	IPR032675	-
	Tsu02g00626	727	SMART	till_3	5	141	IPR000157	GO:0007165
	Tsu02g00626	727	Pfam	Leucine Rich Repeat	617	636	IPR011713	-
	Tsu02g00626	727	PRINTS	Disease resistance protein signature	278	292	-	-
	Tsu02g00626	727	PRINTS	Disease resistance protein signature	681	697	-	-
	Tsu02g00626	727	PRINTS	Disease resistance protein signature	371	385	-	-
	Tsu02g00626	727	PRINTS	Disease resistance protein signature	201	216	-	-
	Tsu02g00626	727	Pfam	NB-ARC domain	182	402	IPR002182	GO:0043531
	Tsu02g00626	727	SUPERFAMILY	L domain-like	538	725	-	-
	Tsu02g00626	727	SUPERFAMILY	"Winged helix" DNA-binding domain	407	511	IPR036390	-
	Tsu02g00626	727	Gene3D	-	2	172	IPR035897	-
	Tsu02g00626	727	Gene3D	-	337	420	IPR042197	-
	Tsu02g00626	727	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	171	430	IPR027417	-
	Tsu02g00626	727	Pfam	TIR domain	5	171	IPR000157	GO:0007165
	Tsu02g00626	727	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	4	724	IPR044974	GO:0006952
	Tsu02g00626	727	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	4	724	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g00626	Tsu-Chr2	5261144	5265070	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g00626	2	722	WRKY Transcription Factor Family	AT4G12020	33.784	2.17e-95	323

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g00626	-		-	gmx:100814075	837.795