Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00613 ATGTTGTTGTCTCTTCATACTCGTCGTAAACTCTCTCTATCTTTCTCTTCACATTTTGATCACGATGctttaattttacttatttgCATAACAATAACAGTGTTCTTTTTATGTTGTGAAAGGAGTTCTGCAACTCTATCTGCCGAATCAGAAGTAGACAAGAAGCAAGTATTCGATGGAGACGAGGCTGCTTTGCTTGTTAGAGAGCTCAGGAATAATTTTGATAGTGGCAAGACAAAGAGCTATGAATGGCGGATTTCACAATTACAGGCCATATCCAAGATGttagaagagaaagagaatgaaATTATTGATGCTCTTCATAAAGACGTTTCTAAACCAAGACTAGAAGCATATATAACTGAGGTTTTTCAGGCGAAAACTTCATGTAATGAAGCACTTCAAGAACTGAAACATTGGATGAAGCCtgaaaagGTGAGTACTTCAATCACAACATTTCCATCATCAGCAGAGATTGTATCAGAACCACTAGGAGTTGTGTTGATCATATCAACATGGAACTTTCCTTTTTCATTATCATTGGATCCAGTCATTGGAGCCATTTCAGCGGGTAACACAGTGGTTTTGAAACCATCAGAAATTGCTCCCGCAACATCATCTCTGCTTGCAAATTTTCTAGAAACTTATCTAGACAACTCTGCAGTAAGAGTTGTTGAAGGGGCTGTTCCTGAAACAACTGCACTCCTGGACCAGAAGTGGGATAAGATACTTTACACAGGTAGTGCTCGAGTAGGTCGCATTGTTATGGCTGCAGCTGCAAAGCATCTTACTCCAGTGATTCTGGAGCTTGGAGGAAAGTGTCCAGCAGTTGTTGATTCAAATATCAACTTACAAGTCACTGCTAGAAGAATAATTGCTGGCAAATGGGCATGTAATAGTGGACAAGCATGCATTTCTGTTGATTATATCATCACAAGAAAAGACTTTGCTCCAACACTTATAGCTGCTTTAAAAGAAGAGCTGGAGAATTTTTTTGGGAAAGATCCAATAGAGTCAAAAGATATGTCTCGTATTGTGTCTCCAACTCAATTTGCACGACTCGTGAAACTCTTGGATGAGGATAAGGCATCTGACAAAATTGTTTTAGGAGGTCAGAGGGATGAGAAGAAATTAAAGATTGCTCCAACTATCTTATTGGATGTTCCAGAAGAAGCTATGGTTATGCAAGAGGAGATATTTGGGCCAATATTGCCAATTATCACTGTAGACAACATAGAAGATAGCTATGGTATAATAAAATCAAGGCCAAAACCTCTCGCTGCATATCTCTTCACAAACAATGAGCAACTGAAGAAGGATTATGTGGATAAGATATCTTCTGGAGGGATGCTCATCAACGACGCTGTTGTGCATGTAGTTGCAACTCGTGGTTTGCCTTTTGGAGGAGTTGAGGAGAGTGGAATGGGTTGTTACCATGGAAAGTTCTCTTTTGATAGTTTCAGCCATAAAAAGGCAGTTTTGTATAAAGGTTTTGATTCAGATCCAGACATAAGAAGCAATTCCATTTCTAATctTTTTTCATCACTAGAGattagagaagaaaaagaagaagatgaagCTTGGTTTGGTAATAAACGGAAAAGTGGAAGAAACTATATTCTACCAGATGAAACCATGTTTTCAAGACCAAGTCTCATGAACCATGCTGCTGGTTCTTCAATTGTGTTCCCCATTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTCAACATAGGCCAACCACCAAGGCCTTATTATCTTGATATTGACACTGGTAGTGAACTCACATGGCTCCAATGTGATGCCCCTTGTTCTCAATGTTCTGAGACACCACATCCACTCTACAAGCCTAGCAATGACTTTGTACCCTGCAAGGATCCACTTTGTGCATCTTTGCAGCCTACTGATGACTACACATGTGAAGATCCTAATCAATGTGACTATGAAATTAAGTATGCTGATCAATACTCAACTCTTGGTGTACTTATAAATGATGTTTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTCGGATGGCGCTCGGATGTGGATATGATCAGATCTTTTCACCTTCTACTTACCATCCCTTAGATGGAATACTTGGACTTGGAAGGGGAAAGGCTAGCTTGGTATCACAGCTGAATAGTCAGGGACTGGTGCGAAATGTGATCGGACATTGTTTAAGCTCGCGAGGAGGAGGATATATCTTCTTCGGAAATGTTTATGATTCTTCTAAAATGAGTTGGACTCCAATTTCATCTATAGATTCAGGAAAACATTACTCAGCGGGACCAGCTGAACTTGTTTTCGGAGGAAGGAAGACTGGTGTGGGAAGtctgaatattatttttgataCCGGAAGTTCCTACACTTATTTCAACTCTCAGGCTTACCATGCATTGATCACTTTGCTGAATAAGGAATTAAATAGGAAGCCGATAAAAGCAGCACCTGATGACCAAACTTTACCGATGTGTTGGCACGGTAAAAGACCTTTCAGAAGCATAAATGAAGTGAAGAAATACTTCAAGCCACTAACACTTAGTTtcaccaatggtggaagagtTAAACCTCAGTTTGAGATCCCTCCTGAAGCTTATCTTATAATATCAGTAAGTTCTAATTTACCAAACTCTTCTATGTTTATTAACTTCTATAACAAATAA 2682 0.3796 MLLSLHTRRKLSLSFSSHFDHDALILLICITITVFFLCCERSSATLSAESEVDKKQVFDGDEAALLVRELRNNFDSGKTKSYEWRISQLQAISKMLEEKENEIIDALHKDVSKPRLEAYITEVFQAKTSCNEALQELKHWMKPEKVSTSITTFPSSAEIVSEPLGVVLIISTWNFPFSLSLDPVIGAISAGNTVVLKPSEIAPATSSLLANFLETYLDNSAVRVVEGAVPETTALLDQKWDKILYTGSARVGRIVMAAAAKHLTPVILELGGKCPAVVDSNINLQVTARRIIAGKWACNSGQACISVDYIITRKDFAPTLIAALKEELENFFGKDPIESKDMSRIVSPTQFARLVKLLDEDKASDKIVLGGQRDEKKLKIAPTILLDVPEEAMVMQEEIFGPILPIITVDNIEDSYGIIKSRPKPLAAYLFTNNEQLKKDYVDKISSGGMLINDAVVHVVATRGLPFGGVEESGMGCYHGKFSFDSFSHKKAVLYKGFDSDPDIRSNSISNLFSSLEIREEKEEDEAWFGNKRKSGRNYILPDETMFSRPSLMNHAAGSSIVFPIYGNVYPVGFYNVTLNIGQPPRPYYLDIDTGSELTWLQCDAPCSQCSETPHPLYKPSNDFVPCKDPLCASLQPTDDYTCEDPNQCDYEIKYADQYSTLGVLINDVYLLNFTNGVQLKVRMALGCGYDQIFSPSTYHPLDGILGLGRGKASLVSQLNSQGLVRNVIGHCLSSRGGGYIFFGNVYDSSKMSWTPISSIDSGKHYSAGPAELVFGGRKTGVGSLNIIFDTGSSYTYFNSQAYHALITLLNKELNRKPIKAAPDDQTLPMCWHGKRPFRSINEVKKYFKPLTLSFTNGGRVKPQFEIPPEAYLIISVSSNLPNSSMFINFYNK 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00613 893 Coils Coil 89 109 - -
Tsu02g00613 893 ProSiteProfiles Peptidase family A1 domain profile. 575 893 IPR033121 -
Tsu02g00613 893 SUPERFAMILY ALDH-like 65 497 IPR016161 GO:0016491
Tsu02g00613 893 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER I1, CHLOROPLASTIC 37 509 - -
Tsu02g00613 893 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 71 491 IPR016162 GO:0016491
Tsu02g00613 893 Gene3D Acid Proteases 746 890 IPR021109 -
Tsu02g00613 893 Pfam Aldehyde dehydrogenase family 61 493 IPR015590 GO:0016491
Tsu02g00613 893 PANTHER ALDEHYDE DEHYDROGENASE 37 509 IPR012394 GO:0006081
Tsu02g00613 893 Pfam Xylanase inhibitor N-terminal 575 745 IPR032861 -
Tsu02g00613 893 SUPERFAMILY Acid proteases 567 876 IPR021109 -
Tsu02g00613 893 Gene3D Acid Proteases 552 745 IPR021109 -
Tsu02g00613 893 Pfam Xylanase inhibitor C-terminal 783 861 IPR032799 -
Tsu02g00613 893 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 473 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00613 Tsu-Chr2 5153831 5162013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00613 29 505 Aldehyde Dehydrogenase Gene Family AT4G34240 65.971 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00613 K00128 - gmx:100800699 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00613 02 5153831 5162013 Tsu02g00613 02 5153831 5162013 ECH
Tsu02g00613 02 5153831 5162013 Tsu07g01263 07 11026588 11029520 ECH