Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00612 ATGGCCAAGGAAAATGAGCCACCTGTGAAGAAAGAAGTTAGTGACGATAGTTCCTCGAGTGTTGAGATCGGGGATTTAGAATGTCAATCTAGATTTAGTTTGGAGAGGGAGATGGGATTGGCGAGTTGTCGTGTGTGTCAGTGTGCTGAATCTGATAAACGGGGTGATGCTGCTTTAGAATTTTTGGGTATCACCCCAGTTATAGAAAGCAAGGGGGAAGTTAAGTCTGATGATAAGGGAATTCCAAAAGATACGACTCTTAACCGAAACTTTGAAAGCAAACCTGGGATGATGGAATTTGTAGGCCCTGATGGGGAGGTTTTTGTTTGTAAGAATGATTTGGAAGTTGGTTTGTCTCATGAAGATACGTTAATTGAACTTGGTTGTTGTTGTAAAAATGATCTTGCTTTAGTACATTATGCTTGTGCGCTTAAGTGGTTTATCAACCATGGATCTACCATTTGTGAAATATGCGGACATATAGCAAAGAATATTAGAATATCTGACTTCAATAAGGTTATTGGTTCTTTAAAAGAGTACGAATCATTGAGGGAAAGAACTGTTAATGGAGTTCCTGGTCCTCCACAAGATCATCCAAGTACTGGTGTGGATCCTGATGCTGTGGCTGCTATTCGGAGGCAACGGTTAAGTGAAATTGCACAATGGTTTTGTCCTCATAATAGCAATAACTTTAACAACAATAGCAACATGGACTCAGTTTCACAGCTTGTTTCTGAGCAGCCTTTGAATATTGTTGTCGAAGAAGCTGGCCCGGTACAGAGTCCTGCAACTAAGTGGGCCGTAGAGTGTACAGGGATCTTGCTTGCTACAGGGCTGCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAATATTGCAAGAAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGATTTTTTTCCGCTTCTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATATTGTTTGTTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACGCACAGTGCCCATACAACGTGA 1074 0.419 MAKENEPPVKKEVSDDSSSSVEIGDLECQSRFSLEREMGLASCRVCQCAESDKRGDAALEFLGITPVIESKGEVKSDDKGIPKDTTLNRNFESKPGMMEFVGPDGEVFVCKNDLEVGLSHEDTLIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIAKNIRISDFNKVIGSLKEYESLRERTVNGVPGPPQDHPSTGVDPDAVAAIRRQRLSEIAQWFCPHNSNNFNNNSNMDSVSQLVSEQPLNIVVEEAGPVQSPATKWAVECTGILLATGLLTITLAWLIAPRVGKNIARSGLHILLGGVCALTVVIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00612 357 Pfam RING-variant domain 122 158 IPR011016 GO:0008270
Tsu02g00612 357 SMART ringv_2 109 159 IPR011016 GO:0008270
Tsu02g00612 357 ProSiteProfiles Zinc finger RING-CH-type profile. 102 165 IPR011016 GO:0008270
Tsu02g00612 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 161 IPR013083 -
Tsu02g00612 357 PANTHER ZINC FINGER, RING-CH-TYPE 11 356 - -
Tsu02g00612 357 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g00612 357 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 356 - -
Tsu02g00612 357 MobiDBLite consensus disorder prediction 1 18 - -
Tsu02g00612 357 SUPERFAMILY RING/U-box 121 161 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00612 1 347 C3H Transcription Factor Family AT5G08750 60.784 5.80e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00612 - - gmx:100805323 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00612 02 5148736 5153162 Tsu02g00612 02 5148736 5153162 ECH