Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00586 ATGCCTCTTTTAAGGAGGACGCCTTTTGCCTTGACTGAGCCTCCTCAGGATTTGAAGCCAGATGAGCATGTTTACCAAGTTCGatttacaaaagaaatatttcGTGATTATCAAGATTACTTGAACCGTTTGAATCTATACCGTCAGAGGGTTTGGGCATGTAAGGCCACTGGGAAAACTGGCTTGACTTATGAAGAGGCTTTGGTGTCAGAACAACGAGCTACTGAGAAATTCCTACAGTTTCCTAAAGAATTTACAACTCCTGCTTTAAGGATCATTCAGTACAGTATGCTCCCTTTGAAGGAGCTAGCAGATTCTATTGCTGAAAAATTGCAGGAGCGTTTGTATGCTGGTGCCGAATTGTACGGGAAAAAAGATGACGGTGTATGTCCATGCAAAATATTAAAAGTCGTCCAGGAAGGAGTCGACAAATTCCGTTATGAGGTAGCTTGGCTTGATAAAAACAAGAATATAAGTGAAAAAACAGAAGTCAATGCCGAAGATTTGGTGCAAAAGAAGCCGCTTTTTAGTAGAAATCTTCTGAAATCTTTTATCCGGGAATCTACTTATCGAAATGCCCCTTGGGTTTTACATGACAAACTGGCACAAAAGCACGGTATTTCAACTGATGTTCCTGAGGAGTTAAGAGGAAAGGTTTTTTTCAAAGACGGGCTTATAATTTGCTCCAAGAAAAGGAATAATGAGGAATCAATGGAAGAAGCTGATAAACGCAAAAGGAAGTTGGACGGGACACTAGTCAACTGTTCTTCTCAAGCAAAAGAAAATGGAGAATACAAGGATATACCGGTCAAATATCCCATTGATGATCTATTGGTGAAGCCTAGTCCAGACGACCCTGTGTTCACTGATCGTCCTTCTCCATCAAGAGACTTCAATGTTCCAATGCACTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTAATTCTTTTGGTAAACAGTTAAACTTGTGGCCCTACTCTTTGGAAGATTTTGAAAATGCAATCTGCAATAAGGATAGCAATGTGCTCCTTGTGGAATCTCATGCTGCACTTTTTCGAGTTCTTATCGATGATGATGGTGAATACACTTCAGCTGTAGAGAGTCGAAAGTTGCAGAAGatTACAATGGTTACTTGGAGCAAATATTTATGCGATTTTCTGGAAATGATCAATATTCCTCAATTACGGAACTATGAAGCAACCATAAGACGGGGACATTATGGCCTTGTAGATGCCAATGCTAAATTAGAAATCTTATGTGAGTTGGTCAATCAAGTTCTTGAAACTGCAATTTTCAGGGAAAAGTTGGATGTGTTGATTGAACAGCGGCAGGAACTTGGGGCTGCTAAACGGGAAGAAGCTCTAGAAGATGGAAAAAAGAGAAGGCAAAAAAAGGAGATGCTGAAAGCTGGCTCCGAAAGCAATGGGCATAAAATCGACAATGCAGATATCCCATCAAACGATGACCACAATATGCTAAACGGGAATCtgggaaataaaataaatggagagaTAGAGTCAAGGCAAGAGAATTCACATGGTAGAAGCAGGATTAAGCATTCAAGTCATGCTTCAAAAAAGACTCATAAAAACCTGGATTCAGAGCTGAAAGAACCAGCTGAAAATGGAAAAGAATTATCCCATAAGGAATTAAAGAAACAGTCTAAGCAGAGGAGAGAATACTTTGAAAGGGAGATAGAGAAACGAATTATTAGTAGAAGCCCATTAGGCAAAGACCGAGATTACAATAGGTATTGGTGGTTCCGTCGCGATGGGAGGATATTTGTTGAAAGCTGTGAGTCCAAGGAGTGGGGATACTACAGTAGCAAGGAAGAGCTCGATGCATTGATGGGGTCACTGAATTGCAAGGGTGAGCGGGAAAGGGCGCTGAAAAACCACctggaaaaaaattatagtagCATATGCTCAGAACTGCAGAAGAGATCAAAGGATTTGATGCAGAATATTGCGAATGACGAGTCTGCACTTCGAAGGTCTACTCGTGTTCGAGCTCCACCCAGGGAAAATCCTGCCAATGCTTTCCTCAAATATGTTAACAAGTGGAAAGAAGAATAG 2079 0.3992 MPLLRRTPFALTEPPQDLKPDEHVYQVRFTKEIFRDYQDYLNRLNLYRQRVWACKATGKTGLTYEEALVSEQRATEKFLQFPKEFTTPALRIIQYSMLPLKELADSIAEKLQERLYAGAELYGKKDDGVCPCKILKVVQEGVDKFRYEVAWLDKNKNISEKTEVNAEDLVQKKPLFSRNLLKSFIRESTYRNAPWVLHDKLAQKHGISTDVPEELRGKVFFKDGLIICSKKRNNEESMEEADKRKRKLDGTLVNCSSQAKENGEYKDIPVKYPIDDLLVKPSPDDPVFTDRPSPSRDFNVPMHCVGDLLMVWDFCNSFGKQLNLWPYSLEDFENAICNKDSNVLLVESHAALFRVLIDDDGEYTSAVESRKLQKITMVTWSKYLCDFLEMINIPQLRNYEATIRRGHYGLVDANAKLEILCELVNQVLETAIFREKLDVLIEQRQELGAAKREEALEDGKKRRQKKEMLKAGSESNGHKIDNADIPSNDDHNMLNGNLGNKINGEIESRQENSHGRSRIKHSSHASKKTHKNLDSELKEPAENGKELSHKELKKQSKQRREYFEREIEKRIISRSPLGKDRDYNRYWWFRRDGRIFVESCESKEWGYYSSKEELDALMGSLNCKGERERALKNHLEKNYSSICSELQKRSKDLMQNIANDESALRRSTRVRAPPRENPANAFLKYVNKWKEE 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00586 692 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 690 - -
Tsu02g00586 692 ProSiteProfiles DDT domain profile. 302 362 IPR018501 -
Tsu02g00586 692 MobiDBLite consensus disorder prediction 528 560 - -
Tsu02g00586 692 MobiDBLite consensus disorder prediction 452 560 - -
Tsu02g00586 692 MobiDBLite consensus disorder prediction 452 474 - -
Tsu02g00586 692 Pfam DDT domain 303 359 IPR018501 -
Tsu02g00586 692 SMART testlast3 302 362 IPR018501 -
Tsu02g00586 692 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Tsu02g00586 692 Coils Coil 643 663 - -
Tsu02g00586 692 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Tsu02g00586 692 MobiDBLite consensus disorder prediction 488 506 - -
Tsu02g00586 692 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 574 638 IPR028941 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00586 295 511 PHD Transcription Factor Family AT5G35210 24.017 5.92e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tsu02g00586 WAC_Acf1_DNA_bd 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00586 - - var:108323886 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00586 02 4933513 4941292 Tsu02g00586 02 4933513 4941292 ECH