Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00578 ATGGAGAGGAAAACACTCGGACTTTTGTTTATGCTCTTCCTTCTCTTATCCGCTGATGTTGCGGTGAAGACAGCTGAGGCTAGAAGGTGCGAATCAAAGAGCCATAGCTTTAAGGGTCCATGTGCAAGAGACAGCAACTGTGCATCTGTATGCAGGGGAGAAGGTTTCACTGGTGGCGATTGTCGAGGCTTCCGTCGCCGCTGCTTTTGCACCCGGGATTGTTAA 225 0.5022 MERKTLGLLFMLFLLLSADVAVKTAEARRCESKSHSFKGPCARDSNCASVCRGEGFTGGDCRGFRRRCFCTRDC 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00578 74 ProSitePatterns Gamma-thionins family signature. 28 51 IPR008176 GO:0006952
Tsu02g00578 74 PANTHER DEFENSIN MTDEF4.7 1 74 - -
Tsu02g00578 74 SMART gth_4 29 74 IPR003614 GO:0006952
Tsu02g00578 74 CDD Knot1 39 71 IPR003614 GO:0006952
Tsu02g00578 74 SUPERFAMILY Scorpion toxin-like 28 74 IPR036574 -
Tsu02g00578 74 PRINTS Purothionin signature 59 73 IPR008176 GO:0006952
Tsu02g00578 74 PRINTS Purothionin signature 29 44 IPR008176 GO:0006952
Tsu02g00578 74 Pfam Gamma-thionin family 28 74 - -
Tsu02g00578 74 Gene3D - 28 74 IPR036574 -
Tsu02g00578 74 PANTHER DEFENSIN-LIKE PROTEIN 1 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00578 Tsu-Chr2 4885909 4886250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00578 3 74 Plant Defensins Gene Families AT2G02100 55.556 2.03e-25 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00578 - - jre:108987534 66.2402