Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00576 ATGGGTAGATCCCCTTGCTGTGAAAAACAACACACCAACAAAGGTGCTTGGTCTAAAGAAGAAGACGACCGTCTCATCAACTACATCAAACAAAACGGCGAAGGTTGTTGGCGTTCTCTTCCCAAAGCCGCTGGCTTGGCTCGTTGTGGCAAAAGTTGCAGACTCAGATGGATTAATTACCTTAGACCTGATCTCAAGAGAGGAAACTTCACtcatgaagaagatgaacttATCATTAGCCTCCACTCTTCTGTTGGTAACAAatgGTCTCTAATTGCTCAAAAATTGTCTGGAAGAACCGACAATGAAATCAAGAATTACTGGAACACGCACATCAAGCGCAAACTCCAAAGCCGTGGAATTGATCCTTCAACTCATCGTCCACTTAACCATGCTGCTGCCACTGCTGCTGCCAGTACTTCCTCAACAACTGCCTCTGCAGCTGTTGTTTCTCCATTGCCTGTGGTCCCCACAAGCAACGAAAGCAGCAGTTGCAGCAGCATAAGCCGCAACATAATCAAGAGCGAGTTTCCGTTATTCGGTACTAATGATGGCTCTTTAAAACAAAAGTTTGTTGTAGTTGATTCCGGTAATGGTGGTGGTGTTGAAGATTCCGTTTCAAATAGTAGCAGTGGTGTTACTGTTGAAGAAATAGCttatcctcctcctcctccacaaATCAACTTGGAACTTTCATTGGCTCCACCATCTTCTTCTCAACAGCCACAAGGTGGGTGTCTTTGTCGTCAAGCTTTAGGGTTACAAAATGGTGGTAACCATCCTTGTAGATGCAACAATACCATCCTTGGAGCTTCTGCTATTGCTTCACCGCCATCTGTTGCTACCACCGGCGCCGGCtattgttattttaaatatttcgGAGCTGGGATTCTcaaattttga 903 0.4208 MGRSPCCEKQHTNKGAWSKEEDDRLINYIKQNGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTHEEDELIISLHSSVGNKWSLIAQKLSGRTDNEIKNYWNTHIKRKLQSRGIDPSTHRPLNHAAATAAASTSSTTASAAVVSPLPVVPTSNESSSCSSISRNIIKSEFPLFGTNDGSLKQKFVVVDSGNGGGVEDSVSNSSSGVTVEEIAYPPPPPQINLELSLAPPSSSQQPQGGCLCRQALGLQNGGNHPCRCNNTILGASAIASPPSVATTGAGYCYFKYFGAGILKF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00576 300 CDD SANT 69 112 IPR001005 -
Tsu02g00576 300 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu02g00576 300 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu02g00576 300 CDD SANT 16 61 IPR001005 -
Tsu02g00576 300 Gene3D - 69 139 - -
Tsu02g00576 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu02g00576 300 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu02g00576 300 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tsu02g00576 300 SMART sant 13 63 IPR001005 -
Tsu02g00576 300 SMART sant 66 114 IPR001005 -
Tsu02g00576 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu02g00576 300 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 241 - -
Tsu02g00576 300 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu02g00576 300 MobiDBLite consensus disorder prediction 119 141 - -
Tsu02g00576 300 Gene3D - 14 66 - -
Tsu02g00576 300 PANTHER TRANSCRIPTION FACTOR MYB7 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00576 Tsu-Chr2 4865996 4867427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00576 1 246 MYB Transcription Factor Family AT2G16720 52.439 8.68e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g00576 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00576 K09422 - twl:119990787 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00576 02 4865996 4867427 Tsu02g00576 02 4865996 4867427 ECH
Tsu02g00576 02 4865996 4867427 Tsu07g01235 07 10674093 10675707 PCT