Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00572 ATGGTTTTTTATAACATTGAAGATGCTTGGAAGTTCTGGGTTGATTATGGTGGAAGAGTTGGATTTGGGGTGAGGAAACAATATACACACAAGAAAAAAGATGGATCAATCAGTTCTTGTAGGTTTGTTTGTTGTAAAGAAGGCTTACGGAAGCCAGACAAACGAGATTATAAAACAATTAATCCGAGACCGGAGACTAGAACAAATTGTCGAGCAAGGATAGGACTTAAGCATACGGGTGGACAATTTATTGTGTATGATTTTGTGGAGGAACATAACCACAATGTACATCTACAAGAAACCATTCATATGTTGTCATCTGAACAAAAAGTTTTAGAAGTTCAATGCCATCAAATTGATCTAGCAAATGATGACGGCCTACGACATAGGACATCGCTTGATTTAATGAGTAAAGAAGTGGGAGGTAGTACTAGTAGTGACTTTGGATATACACCCATCGATCAAAAGAATAATATCCACAAAAGAAGGAAGAGTTTGGTAAATGGGGAAGTCGGTTGTCTATTGCAATACTTTCAAAGACAGTTGGTTGACAATCCAACTTCCTACCATGCCTATCAAGTAGATGCTGAAGATCAAATTGCCAATGTGTTTTGGGCAGATGCAAGGATGCTAATTGATTATGGGTATTTCGGCGATGTGGTTTCTCTTGATTCAACATATTGCACCGATTGTCCGCACATACCACTAGCAGTGTTTTCAGGATTTAACCATCATCGAGGATTAGTGATCTTTGGGGCTGCATTATTATATGATGAAACAGCGGAGTCCTACATGTGGCTCTTTGAGAAATTTCTAGAGGCACATAAGCAGAAAATGCCTCAAACAATTTTTACTAATCAAAACCAGACAATAGAAAAAGCATTAGCTGTTGTTATGCCTGGAACTTACAATGGCTTATGTATGTGGCACTTGATGCAGAACTTGGGTAATTTAGTGAAGGGTGAGTCTGATTTTCTTATTGACTTTAAGAAGTGCATGTATGActatgaagatgaagaacaatttGAAGAAGGTTGGAGAACCCTCCTTGTAAAGTATGATGTTAAGGAAAATACTTGGTTGCAAAGAGCGTACACTATAAAGGAGAAATGGGCAGCTTGTTATACGAAGAAAGCTTTTACATTAGGAATGCAAAGCACCCAACTTACTGACAATGTGAATGTAGAAATTAAAAGTTTCATGAATGCAGACTTGCATATAATCAAGTTTTTTGAGCATTTTGAGGGTGTTGTAGAAGAAAAGCGATATAATGAACTGAAGTCTGAATATGAAGCACGCCAAAATATTTCAAGACTCAAGTACCCTTATTCTGGTATCTTACAAAGTGTCTATGGGCTTTATACTCCCACTATTTTTGATCTATTTCAACACGAGTATGAGTTATTTGAAGCATGTTCTGTGAAGAGCATGAACAAAAATATGAACATGCAAACTCCCACAATTGATTTTGTGATTGCCATGGTAGAGGATTTGGGAGAGTGGCAAGTGTCTTTTGATTTGGATAAGACTTCAATTAGTTGCTCTTGTCGTAAGTTTGAGAGCTTTGGTATACTTTGTTGTCATTGTATAAAGGTCTTTATTCATATGGATGTCAAATCAGTGCCCGCACGTTATATCCTGAAAAGGTGGACAAAGTTAGCAAGAAGTGGGGCTTTACCTAATGTTGGTGTTAGTGACATGGTAGAAGATGCTGATCTATCCCCATTGCAACGCTACAAGAAAATTTGTCCCCGCCTTATTAGGATAGCCATTGAAGCATGTAGAAGTAAAGAAACATTCTTGTTCCTTAGCAAAGTTATTGATGAATTAGATAGGCAAATGTTGGAGTTTCAAAATAATCCAGTAACTGTAACTCCAATTACTGGAAGGAAAGTGGCGTGGTCCAATGTTGATTTGGCAAAGCCTATTAAACGATCTAAGTTAGACTCTAATATCATCTTAGATTTTGCGTCTGATTCATTTTCACAGAATCAGCAAAAACAACTTTTCAGGTGA 2016 0.3695 MVFYNIEDAWKFWVDYGGRVGFGVRKQYTHKKKDGSISSCRFVCCKEGLRKPDKRDYKTINPRPETRTNCRARIGLKHTGGQFIVYDFVEEHNHNVHLQETIHMLSSEQKVLEVQCHQIDLANDDGLRHRTSLDLMSKEVGGSTSSDFGYTPIDQKNNIHKRRKSLVNGEVGCLLQYFQRQLVDNPTSYHAYQVDAEDQIANVFWADARMLIDYGYFGDVVSLDSTYCTDCPHIPLAVFSGFNHHRGLVIFGAALLYDETAESYMWLFEKFLEAHKQKMPQTIFTNQNQTIEKALAVVMPGTYNGLCMWHLMQNLGNLVKGESDFLIDFKKCMYDYEDEEQFEEGWRTLLVKYDVKENTWLQRAYTIKEKWAACYTKKAFTLGMQSTQLTDNVNVEIKSFMNADLHIIKFFEHFEGVVEEKRYNELKSEYEARQNISRLKYPYSGILQSVYGLYTPTIFDLFQHEYELFEACSVKSMNKNMNMQTPTIDFVIAMVEDLGEWQVSFDLDKTSISCSCRKFESFGILCCHCIKVFIHMDVKSVPARYILKRWTKLARSGALPNVGVSDMVEDADLSPLQRYKKICPRLIRIAIEACRSKETFLFLSKVIDELDRQMLEFQNNPVTVTPITGRKVAWSNVDLAKPIKRSKLDSNIILDFASDSFSQNQQKQLFR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00572 671 ProSiteProfiles Zinc finger SWIM-type profile. 501 537 IPR007527 GO:0008270
Tsu02g00572 671 Pfam FAR1 DNA-binding domain 11 96 IPR004330 -
Tsu02g00572 671 SMART 26again6 512 539 IPR006564 GO:0008270
Tsu02g00572 671 Pfam SWIM zinc finger 503 535 IPR007527 GO:0008270
Tsu02g00572 671 Pfam MULE transposase domain 220 314 IPR018289 -
Tsu02g00572 671 PANTHER OS03G0181600 PROTEIN 1 617 - -
Tsu02g00572 671 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 617 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00572 Tsu-Chr2 4833055 4839126 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g00572 MULE 1.9e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00572 - - ccaj:109790316 793.112