Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00552 ATGCCTTTTGAAGTCATGGATCAGAGGGGTGTTTCTGACCTTTTTGATGATATTTCCTATCATTCTGAGAGGAATGTTGGATTAAGGAAGCCAAAATACATGAATGGCCAACACCCCCAAGgaaTGAATGGAATGGTAGCACCGCCTGGTAGCACGTTGAATACTTCATCGCCCTTTGAAGTAAATGGAAAATCTGGATTTCCGATGTCGCAAACTAATCTATCTGAGGAAAGTGTAGAAAAGCTACCTTTTGGCGCAGAACAAGGGATTGCTGGTGTATTGAAAGGTTCTAATGAATCCTTTCGTTATAATCCCCAATCATGGTCTGATGTGTTTAGGCAGTCAGTAGTACCTACCTCATATCGTCTAGTTGGGAATAAGCTTGTCGCGGTCGATGCTGTTTCCCACGAAAGTAGTCTATTCTCGAGCTCATTTTCTGATATGTTTAGAGAGAAATTGAATCTATCGGCGAATAATCTTCTGTCCAATCAGCAGACTGCTGCCGGTTCCCTTCTGGAGGAAGATCTGTATAAATCTCTTGAAGAGATGGAGGCTGACTCTATACATAATCTCCTTCCTGATGAAGATGACCTATTTTCTGGTGTTGCTGATGAGTTAGAGCAGAATTCTTTTGCTAGGATTAAAGATGACTCGGAAGATTTGGATTTATTTAGTAGCGGTGGTGGCATGGAGCTGGAAGGAGATGAACGTTTAAGTTCGCTGAAAAGAACAAGTGGTTTGGATGGAGATCACAGTTTCTTTGGAGGTTCTAAAGGAAAATTTCCTTTTGTTGAACAGCCTTCTAGGACACTTTTTGTTAGAAACATTAATAGCAGCGTCGAAGACTTTGAGCTGAAGTCTCTATTTGAGCAATATGGCGATATCCGAACCATGTATACAGCTTGCAAGCATCGTGGGTTTGTGATGATTTCTTATTTTGATATAAGGTCAGCACAGAATGCAATGCAAACACTACAAAGTAGGCCATTGAGGTCTAGGAAACTAGACATACATTATTCGATTCCGAAGGTCAATGCTCCAGAGAAGGATATTGGCCATGGTACGCTGATGTTATCTGGTCTTGATTCAACCGTTTTAAATGATGAGCTTATACActattttggattttatggagaAATTAAAGAAATCTATGAATATCCCGGAATGAACCACCTCAAATTTGTAGAATTTTATGACGTGCGATCTGCAGAAGCTGCACTTCGGGCATTGAACAGGGTTGAAATTTCTGGAAAACAGATTAAGCTTGAACCTGGCCATCCTAGGTTCGCGAGATGTCTGATGCAACAGTCTTATAAGGTGCAAGATGAAAGAGATCTTGGTCGTAGCATTATTGACAACTTGCAATTAAGACAAAAGCCAACTGTGACTTCTGGAGCAATTGATTCTGCCAGTTTGGAAAATGGATATAACCATAGATTTCAATCTGCAATGCGGCAACAGACTTTGAATGGATCTTTTGATAATTCATTCTTTCATGCCAATTCTGGCATCAACAACACTGCGGGAGGGGCATCTACAGGAAAAGTTTCCGGTGTTTCTGATTCCAGTAACCCTGTCGATGCATTGAAGTTTGCATCTAGTCCAACAACATTTCATACTCATTCTTTACCAGAGTATCATGGAAGTTTAGGTAATGGCAGTCCTTATAACTTTTCAAGCACCATTAGCAACAAGGCTGGTAATATAGGCGCTGGAGTGACAGAAGCTGCTAATGGCAGGCATATTCATGGAATAAGCTCAACTGGGAACTTAGCAGAATTCAATGGAGGATCATCCGGGAACGAGATCCGCGCACATCATGGACTTAATCATATATGGAGCGGCTCCAATTTGCATCAGCAATCGCCATCAAGTAACATTTGGCAGAAAATGCCATCGTCATCATTTGGTAATGGTTCTCCAGGCCTGCCTCAAATGTCAAGCTTTGCTAGAACACCTCATCTGCTGAGAACACAACATTTGGATCATCATGTTGGATCAGCGCCGGTTGTTACAGCCTCTCCCTGGGAAAGGAAAAACTCTTACTTGGGAGAGTCTCCTGATGCGTCTGGTTTTCATGTGAGTTCTCCTGGAAATGGAGGTTTTCATGGTTCTTGGCAAATGCGTTCGATGGACTTTTCTCCTCATAACaacatgttttctcatgttgGTGGGAATGGTACTGAACTCTCATCCAGTGCTGGGCAGGGCTCGCCTAATCCATTGTCACATATTCTCTATGGGAGACAACCTACGACTACAATGTCAAAATTTGATCCTACCAATGAGCGGATGAAAAACGGTAACGGTTATAGTCGTAGGAGTGAAGCTAACACCATGAGTAGTGCCGACAGAAAACAATATGAACTTGACCTGGGCCGCATAATGCGTGGAGAAGACACTAGAACAACACTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCCTAGATGAAAAATGTCGGGGAACTTATGATTTTCTGTATTTACCAATTGACTTTAAGGCaagtatttatttttggttgAATAAATGTAATGTTGGATATGCATTCATAAATATGACCGATCCTGCTCAAATTATTCCTTTGCACCAGGCTTTCCATGGTAAAAAATGGGAGAAGTTTAACAGTGAGAAAGTTGCATCACTTGCGTATGCTCGAATTCAAGGAAGAACTTCTCTTATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCAGACAGAAGGACCAAATGCTGGCGATATGGAGCCTTTCCCCATTGGAGCCAATGTTAGAGTGAGACCTGGAAAATCTCGCAATGCTGGCTACGAGGAGAATCGCAACCAAGCTCCTCCTTCAACTTTAACAAACGGAGAAGAGTCGTATGCAAATGGAAACTCCGACTGA 2934 0.4114 MPFEVMDQRGVSDLFDDISYHSERNVGLRKPKYMNGQHPQGMNGMVAPPGSTLNTSSPFEVNGKSGFPMSQTNLSEESVEKLPFGAEQGIAGVLKGSNESFRYNPQSWSDVFRQSVVPTSYRLVGNKLVAVDAVSHESSLFSSSFSDMFREKLNLSANNLLSNQQTAAGSLLEEDLYKSLEEMEADSIHNLLPDEDDLFSGVADELEQNSFARIKDDSEDLDLFSSGGGMELEGDERLSSLKRTSGLDGDHSFFGGSKGKFPFVEQPSRTLFVRNINSSVEDFELKSLFEQYGDIRTMYTACKHRGFVMISYFDIRSAQNAMQTLQSRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSTVLNDELIHYFGFYGEIKEIYEYPGMNHLKFVEFYDVRSAEAALRALNRVEISGKQIKLEPGHPRFARCLMQQSYKVQDERDLGRSIIDNLQLRQKPTVTSGAIDSASLENGYNHRFQSAMRQQTLNGSFDNSFFHANSGINNTAGGASTGKVSGVSDSSNPVDALKFASSPTTFHTHSLPEYHGSLGNGSPYNFSSTISNKAGNIGAGVTEAANGRHIHGISSTGNLAEFNGGSSGNEIRAHHGLNHIWSGSNLHQQSPSSNIWQKMPSSSFGNGSPGLPQMSSFARTPHLLRTQHLDHHVGSAPVVTASPWERKNSYLGESPDASGFHVSSPGNGGFHGSWQMRSMDFSPHNNMFSHVGGNGTELSSSAGQGSPNPLSHILYGRQPTTTMSKFDPTNERMKNGNGYSRRSEANTMSSADRKQYELDLGRIMRGEDTRTTLMIKNIPNKYTSKMLLVALDEKCRGTYDFLYLPIDFKASIYFWLNKCNVGYAFINMTDPAQIIPLHQAFHGKKWEKFNSEKVASLAYARIQGRTSLIAHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKSRNAGYEENRNQAPPSTLTNGEESYANGNSD 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00552 977 MobiDBLite consensus disorder prediction 752 783 - -
Tsu02g00552 977 CDD RRM1_MEI2_like 268 343 IPR034453 -
Tsu02g00552 977 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 972 - -
Tsu02g00552 977 MobiDBLite consensus disorder prediction 951 977 - -
Tsu02g00552 977 Gene3D - 353 446 IPR012677 -
Tsu02g00552 977 Gene3D - 263 352 IPR012677 -
Tsu02g00552 977 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Tsu02g00552 977 SMART rrm1_1 270 338 IPR000504 GO:0003723
Tsu02g00552 977 SMART rrm1_1 355 423 IPR000504 GO:0003723
Tsu02g00552 977 SUPERFAMILY RNA-binding domain, RBD 266 426 IPR035979 GO:0003676
Tsu02g00552 977 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Tsu02g00552 977 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Tsu02g00552 977 SUPERFAMILY RNA-binding domain, RBD 804 895 IPR035979 GO:0003676
Tsu02g00552 977 MobiDBLite consensus disorder prediction 924 977 - -
Tsu02g00552 977 CDD RRM3_MEI2_like 805 897 IPR034454 -
Tsu02g00552 977 Pfam RNA recognition motif 2 802 905 IPR007201 -
Tsu02g00552 977 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Tsu02g00552 977 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00552 Tsu-Chr2 4673473 4678991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00552 267 420 Eukaryotic Initiation Factors Gene Family AT1G71770 26.380 3.52e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00552 - - gmx:100797893 1277.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00552 02 4673473 4678991 Tsu07g01184 07 10119960 10127797 ECH
Tsu02g00552 02 4673473 4678991 Tsu02g00552 02 4673473 4678991 ECH