Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00547 ATGAACGCCGAGCATAAGGAAATGTCGACGAAGTATTCGCTGGGGAAAGTGATGTCGACGAAATGTTCGCTTGGGGGAGCGtctttgtttgaagtgtgtcgaGGAGATGATCGCTTGCTTGAAGGTGGTGTCGACGGCGGAGTTAGTCGTCGCCATTCAGAAACAGTGAGATACTCGTCCAGTCCAGACTTGATGGGAAAAGAGAACCAATTATCAGCTATGGAAGTTGATGATCCAAAATCAACGAATTCTGATCAGATAGCTCCCAAATTCTCAATCAACGTACTGCAGCTATTAAAATCTGCACAAATGCAGCATGGTTTGCGCCATGGAGATTACACACGCTATCGGAGGTATTGCACAGCTCGATTGAGGAGGTTGTATAAATCTTTGAAGTTTACCCACGGCCGTGGTAAATATGCGAAAAGAACCATAACTGAGGCTAATGTCACCGAAGTAAGGTTTCTTCATGTGATTCTCTATTCAGCCGAGAGAGCTTGGAGTCATGCCATGGAGAAAAGGCAGCTTCCGAATGGACCAAATGCATCTCAACGTATCTATCTGATTGGTAGGTTGCGGAAGGCAGTAAAATGGGCTTCTTTGTTTTCACAATTGTGTGCAACCAAGGCAGATTCTAGAACATCTTTGGAAGCTGAGGCTTATGAATCCTATATGAAAGGGAGTTTGTTGTTTGAGCAAGATCAGAACTGGGACGTGGCTTTAAAGCACTTCAAAAGTGCTAGGGCTGTATACGAGGAATTAGGAAAATATGGAGATCTGGATAACCAAGTTTTGTGTCGTGAGCGGGTTGAGGAGCTAGAACCTAGCATCAGATACTGCCTTCACAAAATTGGCCAGTCAAATCTACAAGCCTCTGAACTATTAAACATTGGGGATATGGAAGGACCTGCATTGGACCTTTTTAAGGCTAAACTAGAGGCTGCCATGGCTGAGGCAAGATCTCAACAAGCTGCCTCCATGACAGAATTTCGTTGGCTTGGCCACAGATTTCCAATATCGAATGCCAAAACAAGGGTTGCCATTTTGAAAGCCCAGGAACTGGAGAAAGATATACATGGTCCCTTGGCAGAAAATATTTCAGCAGACAAAAGACTggttatttttgacaaaatcttTTCCGCATACCATGATGCTAGAGGCTTTATTCGCGCTGATTTGgCCACTGCAGGAAGTGCAGAAAGTGTGAAAGATGATTTGAATGGTCTTGATAAGGCTGTCAGTGCTGTCTTAGGAGAAAGAACCATTGAGCGCAACCTCTTGTTGGTCAAGGTTGCAAAAAGTAAACTTGCAAAGCgtaatgatgataaaaatgaaaaagtcaCCAAACCTGAAGAGCTTGTTCGCTTATATGATCTCTTGCTACAGAATACATCTGATCTATCTGATTTAGTCAGTTCTGGAAGGGACCAAAAGTCTGAAGAAGTTAGCTTTGCTGAAGAGTGTTCGTGCAAAACTTTGGCTTTTCGAGCAGAAAGGTGCTTTTATGTTGCAAAGTCATACAGTGTGGCTGGAAAGAGGGCTGAAGCATATGCTTTGTACTGTCGTGCTCGCAGTTTAGCTGAAGATGCCTTAAGAAAGCTTCAAACGCTAGATGGCAATAATAAGACTATGATCAAAGAATTAGAGGTCTTGAGCAATGAATGCCGTTCCAACAGTTGTATAGAACATGCACTGGGGATCATGGAGGAGAAGAGGACTCAAGAGAATATCTCCGAAGGGATCTCCAATATATCATTGACCGGAGTTGAGCGGTCGGAGAAGTTCCTATTGGAGAAACTTGATGTCTATGAGTCTGCTGTGGGTGATTCAAATGTGAAATCTGCACCCCGCATTGCACAGTTTCCACCAGCTTTCCAGGCAATTGCCCGTAACCCTATTGTGCTGGACCTGGCGTTGTCAATACTtgagaaaaaacatatttggaTTCTCGTCAACTATTCTCTCGCGTTAATGCATTTCACAAATCTCGATGACACTCCTATGTTCCGTCAACAGCTCCAATGCTTGGAGGAAAGTGCAGAATCATTACGCCTTAGAAGCACCAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGGCTTGGAGAGGCATATGATGGAGAGATTGCATTTGTAAGTTCCCTTGAAAGTTTTGGAGGAGGGCATAATGATCCTCATTTCGTTGCTTTGGGAGGACCTGTAATGAACAAATTTACTGTTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTAGGACACAGGTAGAGCACATGATTGATGACCGTTTACTACAAATTGTCAATATTGACATCAATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAAAAAAAGCActaaaattgatattgccacCGTCGTAGAAGAGGAATTGAAGAATGCAAGAACGTCGTTTGAGGAAGCCCGTTTCAGTCTGGTTGGTTCTCTTAATAACATTGAGGTCAAGAAGAGATTTGAGTTTCTAGAGGTTGTCACTGGAATTATGGACGCCCATCTTCGATACTTTCAACAGGGATATCAGCTACTACATGAGATGGAACCTTTCATTAGCGAGGTTTTGGATTATGTACAACAgtcaaaagaaaattttgataAGGACCAGATATTACTTTATAAAAGAATGCAGGAATATAAGAAACAGGTTTATCAAGAAAGTAGGCTGTCCTTGAGTGGTTCTCCTACTGGAGACTCTGTGCATCCTTTTTCTAGGATATCACCTGAAGTAGTAGATGTAATAAAGGAATCTGCCGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAGCGATCTTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTCTTGATAGCCGAGGAACGTTGTATTACTACCGCAAGCCATGGAGTGTGTCATATGACAATGATCAAGCATCTCCAAGAAAGAATGCCACTGAAAATGGTTCTGGGTTTCTGAGTCGATGGCTTTCATCTCATTACCATGGGGGTGTCCATGATGAAAAATCTGTAGCACGTCATACAGTAAATCTGCTGACGTCAACCATAAAGGTTGATGCTGATCAATTAGATTTAAGATTTTGCTTCAGAATAATTTCGCCATCAAAGAGCTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGAGTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTGTTGAGTGTCCAGACCCTAGGATCAcCTCCATCAGCTGACTCAGAAAATGGTGACTCTTACTCAGCCGACAATATGTTAGAAAGTTCTCCAGATGATGATCGCACTGAGGCCGTAAAGTCTGGATCCAAAAGTAACCACTTACGTTTATCTAAAAGTATGCAGTTGCAAAAACGCagtataaaaaatgaaaaacctaTTGATGTTCTTAGAAAGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAAGCCTGAACCAGACTGGGCATCTCTAAACCTCGGCATCCTTATATGCATCGAATGCTCTGGTGTTCATCGTAATCTTGGGGTGCATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTATGGGACCACTCTGTCTTAAGTATGTTTGAGTCTCTGGGCAATAATTTTGCAAACTCAGTTTGGGAGGAGCTGTTAAGTTCAGAGAGCACTTTGCAAGATGTTGACACCCATGTTGGTTCATCCAAGGAAAATAGAGACAACCTATTTCATGCAAGAAAACCAAAACATGATGATTCTAATCCATTAAAGGAAAAGTTCATTCACGCAAAGTATGctgagaaaatatttatttgccGGAAAGAGAAAACCCCTGCACAACAAATGTTGGAAAGCATCTGTGCTAATGACAAGAAGGCAGTGTACCAGCATATTATCAAGTCAGAAATGGATGTCAATGCCATCAGTAAGCAAGCATTTTCTGGTAACGCTTCCAACATAGCTTCTTTgattaatttcaaaaaatctgAAAGTGAGAATCAGAATCAGTTGATTGAGGACATACAAGATGGTTCTAGTGTGCTTCACCTCGCTTGCTTAACAAGTGACGCTGGCATGGTGGATCTTCTCCTACAACATGGAGCAGATGTAAATGCTTGTGATTCAAGAAGTTGGACACCACTACATTACTGTATTACCAGAGGGAAGACCGCAGCTGCTAAAGTGCTTCTTCTGAGGGGGGCCAATCCACATCTAGCTGATGAAGAAGGCAACACTCCTCTTAAGCTTGCAATAGAATCCAGCTGTGTTGGCAATGAAATTCTCACTCTCTTGGCAAGATGA 4341 0.4082 MNAEHKEMSTKYSLGKVMSTKCSLGGASLFEVCRGDDRLLEGGVDGGVSRRHSETVRYSSSPDLMGKENQLSAMEVDDPKSTNSDQIAPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYAKRTITEANVTEVRFLHVILYSAERAWSHAMEKRQLPNGPNASQRIYLIGRLRKAVKWASLFSQLCATKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKHFKSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQASELLNIGDMEGPALDLFKAKLEAAMAEARSQQAASMTEFRWLGHRFPISNAKTRVAILKAQELEKDIHGPLAENISADKRLVIFDKIFSAYHDARGFIRADLATAGSAESVKDDLNGLDKAVSAVLGERTIERNLLLVKVAKSKLAKRNDDKNEKVTKPEELVRLYDLLLQNTSDLSDLVSSGRDQKSEEVSFAEECSCKTLAFRAERCFYVAKSYSVAGKRAEAYALYCRARSLAEDALRKLQTLDGNNKTMIKELEVLSNECRSNSCIEHALGIMEEKRTQENISEGISNISLTGVERSEKFLLEKLDVYESAVGDSNVKSAPRIAQFPPAFQAIARNPIVLDLALSILEKKHIWILVNYSLALMHFTNLDDTPMFRQQLQCLEESAESLRLRSTKFYKGCRKYTEGLGEAYDGEIAFVSSLESFGGGHNDPHFVALGGPVMNKFTVALREISTYKELLRTQVEHMIDDRLLQIVNIDINEVKEARKRFDKASLVYDQAREKFMSLKKSTKIDIATVVEEELKNARTSFEEARFSLVGSLNNIEVKKRFEFLEVVTGIMDAHLRYFQQGYQLLHEMEPFISEVLDYVQQSKENFDKDQILLYKRMQEYKKQVYQESRLSLSGSPTGDSVHPFSRISPEVVDVIKESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGTLYYYRKPWSVSYDNDQASPRKNATENGSGFLSRWLSSHYHGGVHDEKSVARHTVNLLTSTIKVDADQLDLRFCFRIISPSKSYTLQAENAVDQMEWMEKINGVIASLLSVQTLGSPPSADSENGDSYSADNMLESSPDDDRTEAVKSGSKSNHLRLSKSMQLQKRSIKNEKPIDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDHSVLSMFESLGNNFANSVWEELLSSESTLQDVDTHVGSSKENRDNLFHARKPKHDDSNPLKEKFIHAKYAEKIFICRKEKTPAQQMLESICANDKKAVYQHIIKSEMDVNAISKQAFSGNASNIASLINFKKSESENQNQLIEDIQDGSSVLHLACLTSDAGMVDLLLQHGADVNACDSRSWTPLHYCITRGKTAAAKVLLLRGANPHLADEEGNTPLKLAIESSCVGNEILTLLAR 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00547 1446 Pfam PH domain 948 1080 IPR001849 -
Tsu02g00547 1446 Pfam BAR domain of APPL family 663 889 - -
Tsu02g00547 1446 SMART arf_gap_3 1146 1292 IPR001164 GO:0005096
Tsu02g00547 1446 Gene3D Arfaptin homology (AH) domain/BAR domain 660 907 IPR027267 -
Tsu02g00547 1446 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 658 1445 - -
Tsu02g00547 1446 MobiDBLite consensus disorder prediction 1110 1124 - -
Tsu02g00547 1446 SMART ANK_2a 1389 1418 IPR002110 GO:0005515
Tsu02g00547 1446 SMART ANK_2a 1356 1385 IPR002110 GO:0005515
Tsu02g00547 1446 CDD SRP68-RBD 94 282 IPR034652 GO:0003723
Tsu02g00547 1446 SUPERFAMILY PH domain-like 860 1081 - -
Tsu02g00547 1446 SMART PH_update 947 1083 IPR001849 -
Tsu02g00547 1446 SUPERFAMILY ArfGap/RecO-like zinc finger 1145 1285 IPR037278 -
Tsu02g00547 1446 Coils Coil 775 795 - -
Tsu02g00547 1446 Gene3D - 1296 1444 IPR036770 -
Tsu02g00547 1446 ProSiteProfiles Ankyrin repeat profile. 1389 1421 IPR002110 GO:0005515
Tsu02g00547 1446 MobiDBLite consensus disorder prediction 1090 1109 - -
Tsu02g00547 1446 PRINTS HIV Rev interacting protein signature 1177 1194 IPR001164 GO:0005096
Tsu02g00547 1446 PRINTS HIV Rev interacting protein signature 1200 1221 IPR001164 GO:0005096
Tsu02g00547 1446 PRINTS HIV Rev interacting protein signature 1158 1177 IPR001164 GO:0005096
Tsu02g00547 1446 MobiDBLite consensus disorder prediction 1245 1268 - -
Tsu02g00547 1446 MobiDBLite consensus disorder prediction 1090 1129 - -
Tsu02g00547 1446 PANTHER CENTAURIN/ARF 658 1445 IPR045258 GO:0005096
Tsu02g00547 1446 Pfam RNA-binding signal recognition particle 68 108 639 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Tsu02g00547 1446 ProSiteProfiles PH domain profile. 946 1081 IPR001849 -
Tsu02g00547 1446 Gene3D Arf GTPase activating protein 1126 1292 IPR038508 -
Tsu02g00547 1446 Gene3D - 939 1091 IPR011993 -
Tsu02g00547 1446 ProSiteProfiles Ankyrin repeat profile. 1356 1388 IPR002110 GO:0005515
Tsu02g00547 1446 CDD PH_ACAP 949 1085 - -
Tsu02g00547 1446 CDD ArfGap 1149 1278 - -
Tsu02g00547 1446 SMART 5bar 662 875 IPR004148 GO:0005515|GO:0005737
Tsu02g00547 1446 Pfam Putative GTPase activating protein for Arf 1149 1284 IPR001164 GO:0005096
Tsu02g00547 1446 Coils Coil 534 554 - -
Tsu02g00547 1446 ProSiteProfiles Ankyrin repeat region circular profile. 1389 1421 - -
Tsu02g00547 1446 SUPERFAMILY BAR/IMD domain-like 662 969 IPR027267 -
Tsu02g00547 1446 CDD BAR_SFC_plant 672 872 IPR035670 -
Tsu02g00547 1446 Pfam Ankyrin repeats (many copies) 1358 1410 IPR002110 GO:0005515
Tsu02g00547 1446 Gene3D - 90 286 IPR038253 GO:0003723
Tsu02g00547 1446 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1146 1291 IPR001164 GO:0005096
Tsu02g00547 1446 ProSiteProfiles Ankyrin repeat region circular profile. 1356 1387 - -
Tsu02g00547 1446 SUPERFAMILY Ankyrin repeat 1298 1434 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00547 Tsu-Chr2 4620184 4650954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00547 1138 1284 C2H2 Transcription Factor Family AT3G07940 39.189 1.75e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00547 K12489 - gmx:100792517 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00547 02 4620184 4650954 Tsu02g00547 02 4620184 4650954 ECH