Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00544 ATGCCTGTTTACGATCTCCGTCCTAAGATCCTTTGTCGGGTCATCAACGTTATGTTGAAGgctGAGCCAGATACTGATGAGGTGTTTGCACAAGTGACTTTGGTTCCAGAGCCAAATCAAGATGAGAATGCGGTAGAGAAAGAACCTCCGCCTGCTCCTCCGCCGCGGTTTCATGTCCATTCGTTTTGTAAAACGTTGACTGCCTCTGATACTAGTACTCATGGTGGTTTTTCTGTTCTTAGGCGTCACGCTGATGAATGTCTTCCTCCACtgGATATGTCAAAGCAACCACCGACACAGGAATTGGTGGCCAAGGATCTACATGGGAATGAGTGGCGTTTTAGGCACATCTTTCGCGGTCAACCGCGTAGGCACTTGTTGCAAAGTGGTTGGAGTGTTTTTGTCAGTTCTAAGAGGCTGGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAGCTTCGTGTTGGTGTCAGGCGTGCAATGAGACAGCAGGGTAATGTTCCGTCCTCGGTTATCTCTAGCCATAGCATGCATCTTGGTGTCCTTGCAACTGCTTGGCATGCCGTGTTGACTGGGACCATGTTCACTGTCTATTACAAGCCTCGGACCAGTCCAGCTGAATTTATTGTTCCGTATGATCAATACATGGAgtctcttaaaaataattataccaTAGGCATGCGGTTCAAAATGAGATTTGAAGGCGAAGAAGCTCCTGAACAAAGGTTTACGGGTACCATTGTTGGAATTGAAGACTCTGACTCCAAAAGATGGCCTAAATCTAAATGGAGATGTCTCAAGGTTAGATGGGATGAAACATCCAACATACCTCGTCCTGAAAGAGTTTCCCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCAGCTCTAAACCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGAGCTAATGTGGTTCCATCATCCCCAGATTCTTCTGTTCTTACCCGCGAAGCATCATCCAAAGTAAGCATGGACCCTTTGCCCGCCAGTGGTTTTCCGAGGGTCTTGCAAGGTCAAGAATCATCGACCTTGAGAGGAAATTTGGCGGAAAGCAATGACTCTTATACTGGCGAGAAGTCAGTTGCATGGCCACCAGCAAATGATGAAGAAAAGATTGATGCTGTTTCTACTTCAAGAAGGTTTGGATCAGAGAACTGGATGTCAATGTCAAGGCAGGAAGCAACATATTCAGATCTTCTGTCAGGATTTGGTGCTGCCCGTGGAGATCATTCTTCCCAACAATTGTTTGTCGATCAAAACGGTCACGTGGCCAATCACAGTAGGAAAAGTTTGTTTGACCGTGAAGGCAAGCATACCATGCTAAGTCAATGGCCTGCAATGCCACCTGGTCTGTCACTCAATTTCTTGCACCCTAATACGAGAGGTTCTGTACAAGGCGGTGATAATTCAAATTACCAAGTTCAAGGGAATATGAGGTACAGTGCATTCGGTGATTATTCTGTGCTTCATGGACATAAAGTAGAAAATCCGCATGGAAACTTTTTGATGCCGCCACCACCTCCAACTCAATATGAGAGTCCTCGTTCAAGAGAACTGCCTCACAAACAAGCATCTGCAAATACAAGTGAGGCTGCAAAGCCGAAAGACGGTGACTGTAAGCTATTCGGTTTCTCACTTCTCAGTAGCCCCACAATGCCAGAAGCTTCTATATcacaaagaaataataatagtGAGCCAGTTAGTCACATGCAATTTTCATCACAGCAACATCATACATTTGAAAATGATCAGAAGCTTGAGCATTCAAAGACCTCAAAATCAGCAGCTGATAATCCAGTTGTAGTTGACGATCAAGAGAAGCTGTTGCAAACTTCTCAGCCTCATGTTAAAGATGTTCAACACAAATCACAAAATGGTTCTTCTAGAAGTTGCACGAAAGTTCACAAGAAAGGGATTGCACTTGGTAGATCAGTGGACCTTACAAAGTTTAGTGACTATGACGAATTGACCGCCGAATTGGATCAGCTGTTCGAATTTGGAGGTGAATTAAAATCACCTCAAAAAGATTGGCTTGTTGTCTACACCGATAATGAGGGTGACATGATGCTTGTTGGCGATGACCCATGGCAGGAGTTTTGTTCGATGGTTCGCAAAATTTACATCTACCCGAAAGAGGAGATTCAGAAAATGAGCCCTGGTACCTTGAGTTCAAAAAATGAAGAGAATCATTCAGCTACCGAAGGCACAGATGCACAAGAAACTAAGTCTCAGCCGAATCAATCAGGTTCAGATGCTTGA 2289 0.4417 MPVYDLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEPPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPKSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVSMDPLPASGFPRVLQGQESSTLRGNLAESNDSYTGEKSVAWPPANDEEKIDAVSTSRRFGSENWMSMSRQEATYSDLLSGFGAARGDHSSQQLFVDQNGHVANHSRKSLFDREGKHTMLSQWPAMPPGLSLNFLHPNTRGSVQGGDNSNYQVQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPRSRELPHKQASANTSEAAKPKDGDCKLFGFSLLSSPTMPEASISQRNNNSEPVSHMQFSSQQHHTFENDQKLEHSKTSKSAADNPVVVDDQEKLLQTSQPHVKDVQHKSQNGSSRSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQLFEFGGELKSPQKDWLVVYTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENHSATEGTDAQETKSQPNQSGSDA 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00544 762 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 746 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g00544 762 SMART B3_2 62 164 IPR003340 GO:0003677
Tsu02g00544 762 MobiDBLite consensus disorder prediction 507 546 - -
Tsu02g00544 762 MobiDBLite consensus disorder prediction 728 762 - -
Tsu02g00544 762 Gene3D - 635 728 - -
Tsu02g00544 762 Pfam AUX/IAA family 569 727 IPR033389 -
Tsu02g00544 762 MobiDBLite consensus disorder prediction 315 329 - -
Tsu02g00544 762 MobiDBLite consensus disorder prediction 562 609 - -
Tsu02g00544 762 ProSiteProfiles PB1 domain profile. 639 721 IPR000270 GO:0005515
Tsu02g00544 762 MobiDBLite consensus disorder prediction 562 589 - -
Tsu02g00544 762 ProSiteProfiles B3 DNA-binding domain profile. 62 164 IPR003340 GO:0003677
Tsu02g00544 762 SUPERFAMILY DNA-binding pseudobarrel domain 58 191 IPR015300 -
Tsu02g00544 762 Pfam Auxin response factor 188 270 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu02g00544 762 MobiDBLite consensus disorder prediction 345 368 - -
Tsu02g00544 762 Gene3D - 59 164 IPR015300 -
Tsu02g00544 762 CDD B3_DNA 60 162 IPR003340 GO:0003677
Tsu02g00544 762 Gene3D - 225 295 - -
Tsu02g00544 762 MobiDBLite consensus disorder prediction 746 762 - -
Tsu02g00544 762 PANTHER AUXIN RESPONSE FACTOR 2 2 746 - -
Tsu02g00544 762 MobiDBLite consensus disorder prediction 294 312 - -
Tsu02g00544 762 SUPERFAMILY CAD & PB1 domains 634 716 - -
Tsu02g00544 762 Pfam B3 DNA binding domain 62 163 IPR003340 GO:0003677
Tsu02g00544 762 MobiDBLite consensus disorder prediction 621 641 - -
Tsu02g00544 762 MobiDBLite consensus disorder prediction 294 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00544 Tsu-Chr2 4586063 4592023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00544 1 762 B3 DNA Binding Superfamily AT5G62000 64.851 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu02g00544 AUX_IAA 4.8e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00544 - - gmx:100815956 1236.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00544 02 4586063 4592023 Tsu02g00544 02 4586063 4592023 ECH