Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00540 ATGTGGGAGTGTACATTGCAGGAAAAAGATCGAGAAAACAAGGAATTGGAACTCAAATGCGACGAGGCTGAATCTCAAATTGAGGCGCCATTGCCTCTCACCGTCACTTCCAGGGCTTTGTATATGTTGGGAGATATAGCTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCAATTGGTCCGTAAACGCACATCCAATTATCGCTCTTCTGGCTTTCCTCGTCGTCCTTCAACCACCATGCTTTCTAATTCTAGCGTCGAAGAATCAATTGAGGATCCCAAATGTGATATACAGCCTGATCAAACAGGAATTAGCTTATGGGAAAGACTTGGGAAAGCTGCAATGTTGAATATTGAATCAGGCTCCTTTTCTTGGGATGAGCTCTCTTCACTGCACCATACAGAACACAGCAGTAGTAATGAACATTCTGAAGATGAAATGAACAAAGCTCTTGAGGTAACCGTGAATTCTGGAGGTGTTGTCTTCTTTGCGTTTTTCAATTGCCAAGGGAGTGATGATGCTTATCCAAATGAGGCGGCAGCTGTTATAAAAATAGCATCATCAAGAATGGCAACGCAATCTGAACGCCTCGGATATGAATTGGCTAAGTGGCTGGGAATCCAAACTCCACAGGCTAGAGTCATTCACAATACCAGTTCAGAATGGCAACAAATAAAGGAAGCTACAGAAAAAGCTAGAGAAGCAGCAGCAAGTTCTGGGAGTGATGAAGTTGGTGAAGTGACATGTTCTGAACTTTTGGAAGCTCTTGAGCTTAGCCGATGTCTGTTTTTAATGAGTTATGTGCATGGTTCACCATTGCTTGAAAGCTCTAGTGCCTTTGAGCTAAGGGAATCTGCAGAAAAAACAGCGGAAGCTCTTGGCAGGGTACTGATGCTGGACTTAGTCATCCGAAATGAAGATAGGCTCCCTTGCCGTGAGCTTAGATGGCGTGGGAATTCTGCAAATTTGTTGTTGGCTGAAAAGATGATCTCTGGAAATACAAATATGCTAGAAGCCGTTTTGGATTCTGCAATTAATCAATATAGACCAAAGGTAATTAGGGCACTTCAAAAAGAAAGAAGGTCAAGTTCAGTAGATAGCAAATTGAATTCCCATAATCCCGGCTTGATCTCACAAGCCTCTGATCTTTCAGAGATCATTGATTCACCGAGATCCACTGACATGAGCCTTATAAGTCAAATGTCAATAGAATCAATGTCTTCTGACCTTAACATTGTAGTCATTGATTCTGGTGTTCCTCGGCGGCCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTATCCTAAGTTGGTTGAGTTGATGATCAATAGTTCTGAGTATGCATCAAACCTGTTAAATGATATAACTGGAGGGAAATTAGGATGTCCTCTACCAGAAGACATGGATGCAACTGATATAAATGCAAGTGACATGACATCAGTAGTTCAAGCATTTCGTACTGGTTTCCGAGCTGCTCTTAGGGACCTACAGGGATTCCATATATTCCTACTCACCCTTCATCAAAGACTTGATACTTTGTTGCGATCATTCATGAACATTTTAAGCAAACTATCTTCAGGGGAATCTGACAAGGAGGACGTATTGGTTCCTGACACGCCTTCATTTGCTGGTGGTTCTTCTCCAATAAGTAAAGAGAGACATGCTAATGATAACAATCAAGATATTACTGATTCGGAATCACAGAGAACTACTTCAAGGTCATTGTCTTCATGTAATAGAGATTGTAGTGACTCGACTTCAACGTCAAGAGAGAGTTGGCATGGAAGGTCCTGTAAAGGATATGGGGACCTACAGCGTAATCTTCGTTTGACAGCCAAGCTCCGTGACTTTAATAAATATGCCAAGGTTGATGCTGAATCTGGTAAAGAATTGGAACTGTGGAATGAAATGCTTAAAAATGATGCTGTCAAGCTATGCCAGGAGAACAATTTCAATACAGGATTTTTCGAGGGCAGTGAAAATAACAGTGTGGTTGATGCATATGAACTGAAGGTCAGACTTGAACATATTCTTGAGAGAATTGCATTGATATCTGAGGCTGCAAGTACAGAGAAACCATCTGCTGTTACAAGCTATATGTTCATCGGTGGCGCACTGGCTGCAAGATCTGTATACACTATGCAATACTTGGGAATTACAcatattttgtgtttgtgtaCAAATGAAATTGGACAATCCGAAACTCAATTTCCTGACATATTTGAATACAAAAATTTCTCGGTGTGTGACAGTGAAGATTTTAACATCACCACTGTATTTGAAGAAGCATGTGATTTTATAGATTGTGTTGAACAAAAAGGTCAGAAGATTTTAGTCCATTGCTTTGAAGGGAAAAGCAGAAGTGTTACATTGGTCCTTGCTTATCTAATGCTCAGGAAGAAGTATACTTTAATAAAAGCATGGCAAAAACTGAAACGAGTTCACCGTCGAGCACAGCCAAATGACGGTTTCGCAAAGATCTTACAAGAACTGGATCAGAAACTGCATGGGAAAGTTTCAATGGAGTGGCAGCATCGGAAACCAACCATGAAAGTTTGTCCCATCTGTGGAAAAAATGCCGGGTTAAGCAGTAGTTCACTTAAGTTACATCTgcagaaatcacataaaaaacTATCATCAGGTAGTGTAGATAGTGCCATGACAATGGAGATCCAAAAAGCATTAACAGCTTTGAAGATTAGCCACAGTGGGAATATTAGCCCCACACATAAGACTTCTCCAAACGGTAGCAGTTTATAA 2766 0.4071 MWECTLQEKDRENKELELKCDEAESQIEAPLPLTVTSRALYMLGDIAAGPAFRFTQWLQLVRKRTSNYRSSGFPRRPSTTMLSNSSVEESIEDPKCDIQPDQTGISLWERLGKAAMLNIESGSFSWDELSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFNCQGSDDAYPNEAAAVIKIASSRMATQSERLGYELAKWLGIQTPQARVIHNTSSEWQQIKEATEKAREAAASSGSDEVGEVTCSELLEALELSRCLFLMSYVHGSPLLESSSAFELRESAEKTAEALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAEKMISGNTNMLEAVLDSAINQYRPKVIRALQKERRSSSVDSKLNSHNPGLISQASDLSEIIDSPRSTDMSLISQMSIESMSSDLNIVVIDSGVPRRPPAGKRANDQVNYPKLVELMINSSEYASNLLNDITGGKLGCPLPEDMDATDINASDMTSVVQAFRTGFRAALRDLQGFHIFLLTLHQRLDTLLRSFMNILSKLSSGESDKEDVLVPDTPSFAGGSSPISKERHANDNNQDITDSESQRTTSRSLSSCNRDCSDSTSTSRESWHGRSCKGYGDLQRNLRLTAKLRDFNKYAKVDAESGKELELWNEMLKNDAVKLCQENNFNTGFFEGSENNSVVDAYELKVRLEHILERIALISEAASTEKPSAVTSYMFIGGALAARSVYTMQYLGITHILCLCTNEIGQSETQFPDIFEYKNFSVCDSEDFNITTVFEEACDFIDCVEQKGQKILVHCFEGKSRSVTLVLAYLMLRKKYTLIKAWQKLKRVHRRAQPNDGFAKILQELDQKLHGKVSMEWQHRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISHSGNISPTHKTSPNGSSL 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00540 921 MobiDBLite consensus disorder prediction 563 596 - -
Tsu02g00540 921 Pfam Actin-fragmin kinase, catalytic 105 419 IPR015275 -
Tsu02g00540 921 ProSiteProfiles Dual specificity protein phosphatase domain profile. 694 839 IPR020422 GO:0006470|GO:0008138
Tsu02g00540 921 SMART dsp_5 694 836 IPR020422 GO:0006470|GO:0008138
Tsu02g00540 921 Gene3D Protein tyrosine phosphatase superfamily 677 849 IPR029021 -
Tsu02g00540 921 Gene3D - 274 407 IPR036940 GO:0016301
Tsu02g00540 921 CDD DSP 695 832 - -
Tsu02g00540 921 MobiDBLite consensus disorder prediction 531 598 - -
Tsu02g00540 921 MobiDBLite consensus disorder prediction 69 89 - -
Tsu02g00540 921 MobiDBLite consensus disorder prediction 69 94 - -
Tsu02g00540 921 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 694 839 IPR029021 -
Tsu02g00540 921 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 10 915 - -
Tsu02g00540 921 Coils Coil 6 26 - -
Tsu02g00540 921 Pfam Dual specificity phosphatase, catalytic domain 713 835 IPR000340 GO:0008138|GO:0016311
Tsu02g00540 921 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 763 815 IPR000387 GO:0016311|GO:0016791
Tsu02g00540 921 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 10 915 IPR035010 GO:0004721|GO:0009737|GO:0043622
Tsu02g00540 921 SUPERFAMILY Protein kinase-like (PK-like) 56 433 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00540 Tsu-Chr2 4565984 4571382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00540 7 903 Protein tyrosine phosphatase (PTP) family AT5G23720 64.427 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00540 K14165 - gmx:100791993 1376.69