Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00539 ATGTGCTGGCAAAGATGGAAAACCATGGCAATGACTGTGGTTTTGCTTCGGCTAAGTTCTTCCATGGAAATCTTCTGTCACTCTTCTCATGCAGATAGAATTGATAAGCTTCCTGGACAACCTCACATAGGTTTTCAACACTTCTCAGGATATGTTACAGTTGATGAAAAAAACCACAGATATCTCTTTTACTATTTTGTTGAATCAGAAActcatccatcttcaaagccTCTAGTCCTTTGGCTCAATGGAGGACCAGGTTGTTCTTCTCTTGGAGTAGGTGCATTCTCTGAAAATGGACCTTTCAGAACCAATGGAGAAGTTCTGATTAAAAATGAGCATAGTTGGAATAGAGAGGCAAACATGTTGTATTTGGAGACACCAGTAGGAGTAGGGTTCTCTTATGCTAAAGGTAGTTTCTCCAATATTAAAGTGAATGATGAAATGACAGctaGGGAAAACCTTGTGTTCTTGCTACACTGGTTCAACAAGTTCCCTCAATACAAACACAGAGATTTGTTCTTGACAGGAGAAAGCTATGCAGGACATTACATTCCACAACTAGCAAATCTCATGATTGGAatcaacaaaaaggaaaagatgttcaATCTTAAAGGCATAGCATTGGGGAATCCGCTTCTAGAATACGCCACTGACTTCAATTCAAGAGCTGAGTTTTTCTGGTCTCATGGATTGATATCAGATTCTACTTACAAAATGTTCACTGCAGACTGTAATTATTCTCGGTATGTCAGTGAGTACTATCGAAACTCAATTTCGCCTCTTTGTTCCAAGGTAATGAGCCAAGTTAGCAGAGAAACCAGCAAGTTTGTGGACAAATATGATGTCACCCTTGATGTATGCATCTCCTCAGTACTTTCACAATCCAAAGCTATTTGTCCGCAAAACCATCAAGCAAATGAGAGTATAGATGTATGTGTAGACGACAAAGTTACAAATTACTTAAACAGACGAGATGTACAAAAGGCGCTCCATGCTGAGCTTATTGGAGTTTTAAAGTGGGATGTATGCAACAACATCCTCGAGTACAATATGCTCAACCTAGAAGTACCTACACTTCATGTTGTTGGATCACTTATAAAAGCTGGAGTTAGGGTATTAATTTATAGTGGAGATCAAGATTCAGTAATTCCACTGACCGGTAGCCGCGCCTTGGTTCAAAAGCTAGCAAAACAGTTAGCATTGAATACAACAGTCCCTTATAGGGTATGGTTTGAAGGTCATCAGgtTGGTGGATGGACTCAAGTTTATGGAAATATTCTCTCATTTGCTACTATCAGAGGTGCCTCTCATGAAGCTCCTTTCTCACAACCTGAAAGATCACTTGTTTTATTCAAGTCCTTCTTGGAAGATAGACCTTTACCTGAAATTTTCTga 1398 0.3798 MCWQRWKTMAMTVVLLRLSSSMEIFCHSSHADRIDKLPGQPHIGFQHFSGYVTVDEKNHRYLFYYFVESETHPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRTNGEVLIKNEHSWNREANMLYLETPVGVGFSYAKGSFSNIKVNDEMTARENLVFLLHWFNKFPQYKHRDLFLTGESYAGHYIPQLANLMIGINKKEKMFNLKGIALGNPLLEYATDFNSRAEFFWSHGLISDSTYKMFTADCNYSRYVSEYYRNSISPLCSKVMSQVSRETSKFVDKYDVTLDVCISSVLSQSKAICPQNHQANESIDVCVDDKVTNYLNRRDVQKALHAELIGVLKWDVCNNILEYNMLNLEVPTLHVVGSLIKAGVRVLIYSGDQDSVIPLTGSRALVQKLAKQLALNTTVPYRVWFEGHQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFKSFLEDRPLPEIF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00539 465 Gene3D - 360 457 - -
Tsu02g00539 465 Gene3D - 313 348 - -
Tsu02g00539 465 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
Tsu02g00539 465 Pfam Serine carboxypeptidase 42 457 IPR001563 GO:0004185|GO:0006508
Tsu02g00539 465 ProSitePatterns Serine carboxypeptidases, histidine active site. 428 445 IPR033124 GO:0004185
Tsu02g00539 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Tsu02g00539 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Tsu02g00539 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Tsu02g00539 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Tsu02g00539 465 PANTHER CARBOXYPEPTIDASE 26 463 - -
Tsu02g00539 465 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Tsu02g00539 465 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 463 IPR001563 GO:0004185|GO:0006508
Tsu02g00539 465 SUPERFAMILY alpha/beta-Hydrolases 36 462 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00539 Tsu-Chr2 4560088 4562950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00539 321 461 Calmodulin-binding Proteins AT2G22960 29.078 5.25e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00539 K16297 - gmx:100800002 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00539 02 4560088 4562950 Tsu02g00539 02 4560088 4562950 ECH