Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00535 ATGGCAGCTTTTTCATATCAATACCAACAACCTTTCTTTGTTGACTCTGAACCATATTTCAATTCCAATACTCTCATTAAGATGTCTTCTCTTGATGAACAAGTCCATATTATAAACGGTAGTAGTTGTGTTGATCAAAATTCTAAGAATACCATATGTGAGAATTTGAGTCCTGAATCATCATCCATGGTtgttgataatcttgaaaaggGTGAACAAGTTACTCAGAAAGTGAATTctatggagaagaagagaagagttAGAAACAAGTCTTCTTTGAGTAGCCCCTTATCTAAGGATACAAAAGAAGGgagaggaaaaaaacaaaagaagagtaGTGGTgaggagaagaaaaaagaagagaagaaggaacaaaagaaaaatgttgaagaAGCTCCAACTGGCTATATCCATGTCAGAGCAAGAAGGGGTCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGgtgagaagagagaaaataagtgAAAGGATGAAGATATTGCAGCAACTTGTGCCTGGCTGTGATAAGATAACTGGGAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTTCAGTCCCTACAGAATCAAGTAGAGTTCCTATCAATGAAACTTGCTTCACTGAATCCAATCTTCTTTGACTTTGCAATGGACCAAGATCCTCAGAGATTAGATAGCATAATAACATCACCATCAGTAGTACCACTACAATCTGAAGCATTATGCAGCTCCAACCATGCCACACCTTTTGCTGACACAAGCTTCCACTCTGCTAATAATGATCACTATGTTTTGGATTATCCAACTCCAGTTTTTCTTCAAGGACAGAGGTCAAATACCTTCTTTGAGCAAACTGATGGACCCTTTTGGGACTTAGAAGATCAACGACAAAAGCTTCTTAATCCATATGGATTCGGCAACAATACATGTTCCttaaattaa 945 0.3302 MAAFSYQYQQPFFVDSEPYFNSNTLIKMSSLDEQVHIINGSSCVDQNSKNTICENLSPESSSMVVDNLEKGEQVTQKVNSMEKKRRVRNKSSLSSPLSKDTKEGRGKKQKKSSGEEKKKEEKKEQKKNVEEAPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQQLVPGCDKITGKALVLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFAMDQDPQRLDSIITSPSVVPLQSEALCSSNHATPFADTSFHSANNDHYVLDYPTPVFLQGQRSNTFFEQTDGPFWDLEDQRQKLLNPYGFGNNTCSLN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00535 314 CDD bHLH_AtBPE_like 135 219 - -
Tsu02g00535 314 Gene3D - 142 212 IPR036638 GO:0046983
Tsu02g00535 314 MobiDBLite consensus disorder prediction 60 75 - -
Tsu02g00535 314 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Tsu02g00535 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Tsu02g00535 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 211 IPR036638 GO:0046983
Tsu02g00535 314 SMART finulus 151 201 IPR011598 GO:0046983
Tsu02g00535 314 Coils Coil 112 132 - -
Tsu02g00535 314 MobiDBLite consensus disorder prediction 100 153 - -
Tsu02g00535 314 MobiDBLite consensus disorder prediction 60 153 - -
Tsu02g00535 314 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 314 - -
Tsu02g00535 314 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 314 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00535 Tsu-Chr2 4525177 4528116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00535 38 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 51.942 3.94e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g00535 HLH 5.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00535 - - gmx:100796018 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00535 02 4525177 4528116 Tsu02g00535 02 4525177 4528116 ECH