Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00531 ATGGGTTGCGCGCTCGGAAAACCTGCCGGTGCCGGAGCTCGACACCGTCGCCGAGATAATACTGTTACTTCTGAAGGAGGTAATAATGCCGTTAAGGTTGAGGAGAGGAAGGAGGCTGAAGCTTCCAGCACCGGTGAAGTTTCCGGCAATGTTCCGGCAACGGTGAGCCGGCTACCTCGAATCAATTCATTGGCGGCAACTCAACCGAGTTGGCCGCCGTGGTTGATGGAAGTCGCCGGTGATGCAATCCGAGACTTGACTCCTCGCCGTGCCAACACTTTCGAGAAGCTTGCTAAGATTGGGAAAGGGACTTATAGCAATGTGTACAAAGCAAAAGACCTTATTACAGGAAAGATAGTGGCATTGAAGAAAGTTAGAATTGATAATATGGAGGCTGAGAGTGTGAAGTTCATGGCAAGAGAGATTCTTGTTTTGAGGAAGCTTGATCATCCCAATGTAATAAAGCTTGAGGGTTTGGTTACTTCAAGAATATCATCAAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGCTGGTCTTATTGCTGGCATTGGTGTCAAATTCTCTGAGCCTCAGGTAAAATGTTACATGAAACAATTATTGTCTGGCCTTGAGCATTGTCACAGCCGAGGTGTATTGCACCGCGATATCAAGGGCTCCAATCTACTTATTGACGACGAAGGAATACTTAAAATTGCAGATTTTGGACTTGCAACTTTCTATGATTCTAACCAAAAGCATGCGATGACTAGTAGAGTTGTGACCCTTTGGTATCGTCCTCCTGAGCTTCTTCTTGGGGCTACATTCTACGGTGTTGGGGTTGATCTTTGGAGTGCCGGATGCATCTTGGCAGAGCTTATTGGTGGAAGGCCAATCATGCCTGGACGAACAGAGGTTGAGCAACTGCACAAAATATACAAGTTATGTGGCTCTCCATCAGATGAATATTGGAAGAAATATAAATTACCAAATGCTACTCTCTTTAAGCCACAACATCCTTATAGAAGGCGCATCTTAGAAACGTTTGCGGattttccatcttcttcattaCCTTTAATTGAAACTCTACTTGCAATAGATCCTGATGTTCGTGGCACTAGCTCATCAGCTATAAATAGTGAATTCTTTACGACTGAGCCCTATGCTTGCGAACCATCGAGTTTACCAAAGTATCCTCCCACCAAAGAATTGGATGTAAAGCTGAGAGATGAAGCAAGAAGGCAAAGAGCTCTAAATGGCAAAACTAATGCAGTTGACGGtgttgaacaagttagagcccGTGAGCGCAGTTATGCAATTCCAGCCCCAGAAGCAAATGCAGAGATCCAAACAAACTTAGATAGGTTGAGAGTTGTGACACAAGCAGATGGAAAAAGTAAAAGTGAGAAATTTCCACCTCCTCATGAGGATGGAGCTGTTGGATATCTCGGGGAGGCTTCGAATAAAGGAGCTGCTTCATTTGGAACAACCAAAACAAATTCATTTAGCTCAATATTATCTAATTCAGTACATTCTAAATCTGTTGGAAGTTTTGCAGCCAGATCTTATAAAGGTTGGAGAAGTGGTGAAGCAGATTCCAAGTTATCATCGTGGAAATTTATGCGTTCTTTCAAGCCGTCAACAGTTGGtctttcatttaatttattatttggaAGCAGAAGATAA 1671 0.4201 MGCALGKPAGAGARHRRRDNTVTSEGGNNAVKVEERKEAEASSTGEVSGNVPATVSRLPRINSLAATQPSWPPWLMEVAGDAIRDLTPRRANTFEKLAKIGKGTYSNVYKAKDLITGKIVALKKVRIDNMEAESVKFMAREILVLRKLDHPNVIKLEGLVTSRISSSLYLVFEYMEHDLAGLIAGIGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDDEGILKIADFGLATFYDSNQKHAMTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELIGGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKKYKLPNATLFKPQHPYRRRILETFADFPSSSLPLIETLLAIDPDVRGTSSSAINSEFFTTEPYACEPSSLPKYPPTKELDVKLRDEARRQRALNGKTNAVDGVEQVRARERSYAIPAPEANAEIQTNLDRLRVVTQADGKSKSEKFPPPHEDGAVGYLGEASNKGAASFGTTKTNSFSSILSNSVHSKSVGSFAARSYKGWRSGEADSKLSSWKFMRSFKPSTVGLSFNLLFGSRR 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00531 556 PANTHER CELL DIVISION PROTEIN KINASE 47 516 - -
Tsu02g00531 556 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 47 516 - -
Tsu02g00531 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Tsu02g00531 556 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Tsu02g00531 556 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Tsu02g00531 556 MobiDBLite consensus disorder prediction 1 51 - -
Tsu02g00531 556 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00531 556 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00531 556 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00531 556 CDD STKc_CDK9_like 94 378 - -
Tsu02g00531 556 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Tsu02g00531 556 SUPERFAMILY Protein kinase-like (PK-like) 89 383 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00531 Tsu-Chr2 4490954 4494888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00531 89 410 Core Cell Cycle Gene Families AT5G10270 50.592 4.38e-115 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu02g00531 Pkinase 1.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00531 K08819 - gmx:100789359 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00531 02 4490954 4494888 Tsu02g00531 02 4490954 4494888 ECH