Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00529 ATGGATAAgctgaattttattaaaaatggagTGAGTAGATTACCTCCTGGATTTCGTTTTCAACCAACAGATGAAGAACTTGTGTTTCAATATTTGAAATGTAAGATTTTTTCATGCCCTTTGCCTGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGAGGTTGTGATGAACAAGAGAGGCACTTTTTCAGTTCAAAGGAATCAAAGTATAGAAATAGTAATAGAATGAGTAGAACAACAAAATGTGGATATTGGAAGGCAACAGGGTCAGACAAAAGAATTTCATCTTCAACTTGTAATGGCATTGTTGGGCTAAGAAAAACTCTAGTTTTTTATGAAGGAAAATCTCCAAATGGGTCTAGAACTAATTGGATCTTGCATGAATATCGTCTCATCAATGTAGAAACTAATCCCAACAACTCAACTCAGAACTATGGAAATGAGATAGGAGATTGGGTTTTGTGTCGGTTATCTATGAGGAAAAGAAGTTTAGAATATGGAAGCACTAGTActcatcataatcataatgCTACTAATTCGAGattaatgtttgattttatgatggtaaacaacaacaacaacaagacaTGTTCTTCTACTTCCTCTTCATGTTCAAGTTCTAGTAACAACAACATTGAGGTCTCTTCAAATCATCACCAAGATGGCTATGCTGATTTTTAA 705 0.3163 MDKLNFIKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSCPLPASIIPEVNVCKYDPWDLPGGCDEQERHFFSSKESKYRNSNRMSRTTKCGYWKATGSDKRISSSTCNGIVGLRKTLVFYEGKSPNGSRTNWILHEYRLINVETNPNNSTQNYGNEIGDWVLCRLSMRKRSLEYGSTSTHHNHNATNSRLMFDFMMVNNNNNKTCSSTSSSCSSSSNNNIEVSSNHHQDGYADF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00529 234 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Tsu02g00529 234 Gene3D NAC domain 23 174 IPR036093 GO:0003677|GO:0006355
Tsu02g00529 234 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Tsu02g00529 234 SUPERFAMILY NAC domain 10 167 IPR036093 GO:0003677|GO:0006355
Tsu02g00529 234 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 234 - -
Tsu02g00529 234 MobiDBLite consensus disorder prediction 215 234 - -
Tsu02g00529 234 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00529 Tsu-Chr2 4483614 4485316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00529 1 171 NAC Transcription Factor Family AT5G13180 61.404 5.81e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g00529 NAM 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00529 - - gmx:100812015 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00529 02 4483614 4485316 Tsu07g01162 07 9921988 9922927 ECH
Tsu02g00529 02 4483614 4485316 Tsu02g00529 02 4483614 4485316 ECH